Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g3456 ATGGGAATTGCATGTGATGGAAGCAGCTTTCTGGACTATGGCTTGAGTGAAGCTGATCCTGCAGTTTGTGCCATTATCAGCAAGGAAAAGGACCGACAGTTTAAAAGCCTTGAGCTTATTGCCTCCGAAAATTTTACTTCTAGAGCAGTGATGGAAGCGGTTGGTTCATGCCTCACAAACAAGTACTCAGAAGGACTACCTGGTAAAAGGTACTATGGTGGAAATGAGTACATTGATGAGCTTGAAACACTATGTCAAGAAAGGGCATTGGCTGCTTTTCACTTAGACGGAAATAAGTGGGGTGTAAATGTTCAACCGTTATCTGGCTCTCCAGCTAATTTTGAGGTTTACACTGCAATTCTTAATCCACATGATCGAATAATGGGTTTGGACTTGCCTCATGGAGGACATTTATCTCATGGATTCATGACTCCTAAAAGACGTGTGTCAGGCACATCAATCTATTTTGAATCTATGCCTTATCGATTGGATGAATTGACAGGCCTAATTGATTATGATATGCTTGAGAAAACTGCTAATCTCTTCCGACCAAGACTCATTATTGCTGGTGCTAGTGCTTATCCCCGAGACATTGACTATCCACGCATGAGAAAAATTGCAGATGAAGTAGGTGCTTTTCTAATGATGGATATGGCTCATATAAGTGGACTTGTTGCTGCTGGTGTGCTTGCTAACCCCTTTGAGTTCTGTGATATTGTGACAACCACAACCCACAAGTCTTTGAGAGGTCCGAGAGGTGGTATGATATTCTTCAAGAAAGATTCGGTGCATGGAGTTGATCTAGAGTCTGCTATTAACAATGCTGTTTTTCCAGGTCTACAGGGTGGTCCTCATAACCACACAATTGGAGGACTAGCAGTTTGCTTGAAGTATGCCCAATCTCCAGAGTTTAAGGTCTATCAAAACCAGGTAGTCTCTAACTGTAGAGCTCTTGCTAATCGATTGATTGAACATGGGTACAAATTGGTTTCTGGTGGAAGTGATAATCACCTGGCTCTTGTTGATCTGAGGCCATCGGGTATTGATGGTGCTCGGGCGGAGAAAATTCTTGACATGGCCTCCATAACTCTCAATAAAAATTCAGTGCCTGGTGATAAGAGTGCCCTGGTTCCAGGAGGTATTCGCATTGGATCGCCTGCAATGACAACAAGAGGACTTGGGGAGAAAGAATTTGTTGTAATTGCAGACTTCATCCACGAGGGTGTACAATTAACGCTTGAAGCCAAACGTTTGGCCCCAGGAACAAAGCTTCAAGACTTCATGAAGTTTATTTCATCGCCTGAATTTCCTTTGAGAGATCAGATTGCAGACTTGCGTAAAAAAGTTGAAGCTCTCACTACTCAATATCCAATTCCTGGAGTCTAA 1386 0.4271 MGIACDGSSFLDYGLSEADPAVCAIISKEKDRQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQERALAAFHLDGNKWGVNVQPLSGSPANFEVYTAILNPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDELTGLIDYDMLEKTANLFRPRLIIAGASAYPRDIDYPRMRKIADEVGAFLMMDMAHISGLVAAGVLANPFEFCDIVTTTTHKSLRGPRGGMIFFKKDSVHGVDLESAINNAVFPGLQGGPHNHTIGGLAVCLKYAQSPEFKVYQNQVVSNCRALANRLIEHGYKLVSGGSDNHLALVDLRPSGIDGARAEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGLGEKEFVVIADFIHEGVQLTLEAKRLAPGTKLQDFMKFISSPEFPLRDQIADLRKKVEALTTQYPIPGV 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g3456 461 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 6 461 - -
Sto9g3456 461 CDD SHMT 17 412 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Sto9g3456 461 ProSitePatterns Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 238 254 IPR019798 GO:0030170
Sto9g3456 461 SUPERFAMILY PLP-dependent transferases 14 460 IPR015424 -
Sto9g3456 461 PIRSF SHMT 11 461 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Sto9g3456 461 Gene3D Aspartate Aminotransferase, domain 1 19 459 IPR015422 GO:0003824
Sto9g3456 461 Hamap Serine hydroxymethyltransferase [glyA]. 14 460 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Sto9g3456 461 Pfam Serine hydroxymethyltransferase 15 405 IPR039429 -
Sto9g3456 461 Gene3D - 44 309 IPR015421 GO:0003824
Sto9g3456 461 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 6 461 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g3456 Sto-Chr9 33971498 33975300 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g3456 K00600 - gmx:100305381 834.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g3456 9 33971498 33975300 Sto9g3456 9 33971498 33975300 ECH