Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g3455 ATGGCCGACGAAACACAGTATTCATCGGGCACAGAGACCACGCCCCACAAGCGCAAGTATGAAGACCCAACGCTTCCACAATCCGGTACTCATAGGCCTACTGCAAGTGGTATTGAGCTCGCCAAGCAGCGTGCTCAGGAGGTCGCTGCTCGCCTCTTAAACAATATTAGTAGTGGAGCTGGTGGGATGGATGCCAAGCGGCCCAAGGTTGAGAATGGTGCCACAGGGTTTGATTCCAATGATGTGAAGCCTCAGTACTCAGTCCCTTCAGCTGCTCCCGTTTCTTATGCCTATCAGGGCACGAGCAAAAAAATAGACATCCCTAATGGAAGAGTCGGTGTTATTATTGGTAAAGGCGGGGAGACTATCAAATACCTTCAAACACAGTCTGGAGCCAAGATCCAAGTTACCCGTGATATGGACGCAGACCCCAATTCTCCAACTAGGATGGTAGAGCTTATGGGTACTCCTGATCAAATTGCAACTGCTGAGAAATTGATTAATGAAGTTCTTGCTGAGGCTGAAGCAGGAGGCTCCGGCATTGTTGCCCGACGACTGACTGGACAAACTGGGTCTGAGCAATTTGTGATGAAAATACCAAATAATAAGGTTGGCCTTGTGATTGGCAAAGGAGGAGAAACAATAAAGAACATGCAAGCACAAACTGGAGCCCGAATTCAGGTGATACCTTTGCACCTTCCTCCAGGTGACACGTCTACAGAAAGGACATTACAAATTGATGGAACCAGTGAACAAATTGAGTCTGCAAAACAGTTGGTTAATCAAGTCATTAGTGAGAATCGTCTTAGAAATCCATCATTGTCTGGTGGTTATCCTCAACAAGGTTACCAAGCCCGACCTCCCTCTAGTTGGGCTCCCCCCGGTGCTCCTATGCAACAACCTGGCTATGGCTATGTGCAGCCAGGGGCATACTCTGGTCCATCACCCCAATATAATATGTCTCAACCACCATATTCAGGCTATCCTTCCCAAACATCTGGTGGATACTCTGGCAATTGGGACCAGTCCACTGTACCACCCCAGCAGTCTACTCATGGTGGTGGTTATGATTATTACAATCAACAGCAGCAGCAAAATGCTGGGGGATCTGCACCGGCGGTTGATGGGACTGCTTACAATTATGGTCAGCCACCTTCTGGATATAACCAATCTGGACAGGGTTATTCTCAGGACAGTTATGGTGGGTATAATGCACCACCACAATCAGGGTATGGTCAGCCATCAACATATGATCAGCAGCAAGGCTATGGCTCAGCCCCCAGCTATGGTAGTGGGAGCAACCCAACACAGGAGGGCCACACTCCTAATTATGGATCTCAAGGAGACTCAACCCAAGCTCCTCCAGCTGGTGTCCAAACTCCAATTTCCCAGCAAGGTACTGCTCAGCCTGGTTATGGGATGCCCCCAACATCCCAAGCTGCTTACGGAAGTCAACCACAAGTACAGTCTGGTTATGGAACTGGTTATGGAGCCCCTCAACCTCAGAAGCCCAGTGGCACTCCTGTTTATGGACAGTCCACACAGTCACCTAGCACAGCAGGGGGATATGGTCAGCCAGGGTATCCTGGCTCTGCAGGGCAACCAGGTTATGGACCCCCACCGTATGGTACTCCTGGTGGTCAGCCTGGTTATGGTCAGGCACCTCCGTCTTACAGCGGCAGTTCTTATGGTGCTGGTTACACTCAACCCCCAGTTTATTCCGGTGATAATGCAGGTGGAAGTACACGCGGAACCTATGATGGTGCACCTGCGCAGGCCGCTCAACAGGCTAAAGCCTCACCTCAAAGTTGA 1812 0.5011 MADETQYSSGTETTPHKRKYEDPTLPQSGTHRPTASGIELAKQRAQEVAARLLNNISSGAGGMDAKRPKVENGATGFDSNDVKPQYSVPSAAPVSYAYQGTSKKIDIPNGRVGVIIGKGGETIKYLQTQSGAKIQVTRDMDADPNSPTRMVELMGTPDQIATAEKLINEVLAEAEAGGSGIVARRLTGQTGSEQFVMKIPNNKVGLVIGKGGETIKNMQAQTGARIQVIPLHLPPGDTSTERTLQIDGTSEQIESAKQLVNQVISENRLRNPSLSGGYPQQGYQARPPSSWAPPGAPMQQPGYGYVQPGAYSGPSPQYNMSQPPYSGYPSQTSGGYSGNWDQSTVPPQQSTHGGGYDYYNQQQQQNAGGSAPAVDGTAYNYGQPPSGYNQSGQGYSQDSYGGYNAPPQSGYGQPSTYDQQQGYGSAPSYGSGSNPTQEGHTPNYGSQGDSTQAPPAGVQTPISQQGTAQPGYGMPPTSQAAYGSQPQVQSGYGTGYGAPQPQKPSGTPVYGQSTQSPSTAGGYGQPGYPGSAGQPGYGPPPYGTPGGQPGYGQAPPSYSGSSYGAGYTQPPVYSGDNAGGSTRGTYDGAPAQAAQQAKASPQS 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g3455 603 MobiDBLite consensus disorder prediction 1 40 - -
Sto9g3455 603 Pfam KH domain 104 169 IPR004088 GO:0003723
Sto9g3455 603 Pfam KH domain 196 261 IPR004088 GO:0003723
Sto9g3455 603 MobiDBLite consensus disorder prediction 312 371 - -
Sto9g3455 603 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 98 177 IPR036612 GO:0003723
Sto9g3455 603 MobiDBLite consensus disorder prediction 269 287 - -
Sto9g3455 603 MobiDBLite consensus disorder prediction 554 581 - -
Sto9g3455 603 CDD KH-I 195 260 - -
Sto9g3455 603 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 189 270 IPR036612 GO:0003723
Sto9g3455 603 CDD KH-I 102 167 - -
Sto9g3455 603 MobiDBLite consensus disorder prediction 58 84 - -
Sto9g3455 603 Gene3D K Homology domain, type 1 190 289 IPR036612 GO:0003723
Sto9g3455 603 Gene3D K Homology domain, type 1 96 189 IPR036612 GO:0003723
Sto9g3455 603 SMART kh_6 191 265 IPR004087 GO:0003676
Sto9g3455 603 SMART kh_6 99 172 IPR004087 GO:0003676
Sto9g3455 603 MobiDBLite consensus disorder prediction 505 522 - -
Sto9g3455 603 ProSiteProfiles Type-1 KH domain profile. 100 167 - -
Sto9g3455 603 PANTHER K DOMAIN-CONTAINING PROTEIN-RELATED 50 552 - -
Sto9g3455 603 PANTHER K DOMAIN-CONTAINING PROTEIN-RELATED 546 598 - -
Sto9g3455 603 MobiDBLite consensus disorder prediction 382 496 - -
Sto9g3455 603 MobiDBLite consensus disorder prediction 269 603 - -
Sto9g3455 603 ProSiteProfiles Type-1 KH domain profile. 192 260 - -
Sto9g3455 603 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 50 552 - -
Sto9g3455 603 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 546 598 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g3455 Sto-Chr9 33964453 33969991 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g3455 K13210 - jre:109008855 712.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g3455 9 33964453 33969991 Sto9g3455 9 33964453 33969991 ECH