Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g3416 ATGAGTGGGATGAAAGCACCTGGAGATATCATTGAAGGGATTGGTGAGGATGATAGGGATTGTTCCTTTGTGTCTGTGAAGACAAGGTCCGAGTTTAGCGCCCATCTTGGGAAGATCAACCAGAAGGTTGAGTTGATATGGTTAAAGGTTAGAAGGGGTAATAAGACGCTCAAACTCCGAGCACGTATTGTGCAGCAGAAAAACTCAATACTTCAAAGGAAGTATACCATCCAAGCAGCCACAGATCCCAGGCATATTGCAGATATAGGGGACTTGACATTGGAGCAGTGCACTGAATTGCAGGAAATGAGCAAGAAATATGTAGATGTGAAGAGCAAGGAGTTGCGGAGAAGTTGTATAAAGTATGACTGGAAGATGAAGGTAGAGAAGCATCTGCCTGACCAATGTTGTTCCGTGGTGAGCTCCGTTCTATTCATGCCATTAGAGGGGGAGCACTGCGTCCATACCACCACGGGCAGGTGCATGGCATGGTTTAGTGCAGCAGTTTCCTCAGGAGTTCCTCTTGTTTTTGTCAATATCCAGACAGAACAGATTCTACATTCGGAGAAAACTAACGTATGGACAAGAGAAACAGGTAGAAGCAAGCAACAAAACCACAACACCACTAACCAAAGAATGCAGGGAATAAGATTGTGGTATCTACCAGGAGTAGCAGAAATGTCAATTGAATTGATCCCTCGACGCAAGGAAGTATGTTTTGGAATGGAAATCAAACGGACAGAAGAGGGGTTTCTGTGCATAAACTCAGTGATGGAAGGTTCGGCAGCTGAGCGAGCTGGGGTTAGACAAGTGTGTGAAGAAGCAACTGAAAGTGGATTCCTTCTGGTGATGTCTCGGTTGGATGGGAAGAGTGTAATGCCCTCTACTGTGTGCTCGGCAGCGATGGCTGTTCCACTTCGCAGTGCTGTAGCCAAGCCCGCGTGCCTTCCTCCAAATCCCTCCCTTGTAACCTCCATCACTTCACtccttcaaaccctaaatcctcaaaaCCCACATCCCTCTAACCTCACTTCACAACCCCTTCAGCAATTCTCATCCCACCTCAACCCAACCCTTGTTATTCACGTCGTTAACAACCAGACCAACCCCTACCATGcccttttcttcttcaattggGCTTCCAACCCTCAACCTAACCcaaacaattactctcataCTCACTCCTGTTACCTCGCCATCACTGATCTCTTGCTTTCTCACTCCCTTTTCTCCACCGCCTTCTCCCTTCTTCACAATTCTCACAACCTCTCCGACTTTATCATCGCCAGATTTATCAAAGCTTTTGGTGACCGTGGCGATATTAGGGGTGCCATTCATTGGTTTCACAAAGTGAAATCCTTTCTAAGAGGCCGTTGTTTGTTCTCCTATAATGCCATATTGGGTGTCTTGGTGAGAGCCAATCGAGTTAATTTGGCCAATGCATTCTACGATCAGATTGTGAAAGAAGGTGTGGTGAAACCCAATGTTTACACTTATACCACAATGATTAGGGGCTTCTGCAAAATGGGCATGTTGGAGAATGCAAGAAAGGTGTTCGATGAAATGAAGTGTGACCCGAACTTGATCACTTACAACACAATGATCAATGTCTTTTGTAAGAAAGGTGAAATGGAGAGTGCCAGGAGGGTTTTTGATCGAATGTTGGAAAGTAAGAATTGTATGCCGGATGTGGTGACTTATACGACTTTGATTGATGGGTATTGCAAGAAAGGTGAATTGCATGAGGCAATGAAGTGTATGACGGAGATGGCGAAACAGGGTTGTCAGCCAAATGTCTTGACCTATAATGCACTTGTAGAAGGTCTTTGTTTGAACGGAAATGTGGATGAAGGGAAGCGGATGATGACTCGGATGCGGTTAAATGGTTTAAAAGACAATGTTGTGACACACACGAGCATATTGAAGGGGTTTTGCATAGTGGGCAAGTCTGATGAAGCTATCAAGCATATGAAGGAAATGGTTAGTCTTGGGATGAATCCAGATGTGAAGTCATATGGCATTATTATTAACGAATATTGCAAAATTAGAAAACCATATGAAGCAATTTCACTTCTGAGGGAAATGAGGGCAAGGAGCATTAAGCCTAGTGTGTCAAGTTTCAATGCGGTGTTCAGAGTTCTTGTGGATTTAGGGAAGCTGCAAGAAGCCATTGTTCTTTTAAAGCAGATGCCTCAAATGGGGTGCTCACCTAATTTCTTATCATATAGCACAGTGATATGTGGGCTTTGTGAAGCGAAGGGTAGGATGCAAGAAGCTGAAGAGCTGGTTAGGGACATGGTTCAGAATGGACATAACCTGGATGCCACCATGTACAGCTGCTTACTTAGGGGGTATTGTGAGGAAGGGAAGGAGGAAATGGCATTGCAAACTGTTTATGACATAATTAGTAATAACTACGTAATTAATTTAGAGAGCTTCTCAACTTTTGTGAAGAAGTTGTGCGCAAAGGGGTATGTGAAAGAGGTGGAGACAATATATGAAGAGATGCGCAGGAGATGCCCTGTACCTGAACCTGATGCAAGTGCATATAAAATGGTTTTACTGTTAGCTAAAATGTCATAG 2583 0.4321 MSGMKAPGDIIEGIGEDDRDCSFVSVKTRSEFSAHLGKINQKVELIWLKVRRGNKTLKLRARIVQQKNSILQRKYTIQAATDPRHIADIGDLTLEQCTELQEMSKKYVDVKSKELRRSCIKYDWKMKVEKHLPDQCCSVVSSVLFMPLEGEHCVHTTTGRCMAWFSAAVSSGVPLVFVNIQTEQILHSEKTNVWTRETGRSKQQNHNTTNQRMQGIRLWYLPGVAEMSIELIPRRKEVCFGMEIKRTEEGFLCINSVMEGSAAERAGVRQVCEEATESGFLLVMSRLDGKSVMPSTVCSAAMAVPLRSAVAKPACLPPNPSLVTSITSLLQTLNPQNPHPSNLTSQPLQQFSSHLNPTLVIHVVNNQTNPYHALFFFNWASNPQPNPNNYSHTHSCYLAITDLLLSHSLFSTAFSLLHNSHNLSDFIIARFIKAFGDRGDIRGAIHWFHKVKSFLRGRCLFSYNAILGVLVRANRVNLANAFYDQIVKEGVVKPNVYTYTTMIRGFCKMGMLENARKVFDEMKCDPNLITYNTMINVFCKKGEMESARRVFDRMLESKNCMPDVVTYTTLIDGYCKKGELHEAMKCMTEMAKQGCQPNVLTYNALVEGLCLNGNVDEGKRMMTRMRLNGLKDNVVTHTSILKGFCIVGKSDEAIKHMKEMVSLGMNPDVKSYGIIINEYCKIRKPYEAISLLREMRARSIKPSVSSFNAVFRVLVDLGKLQEAIVLLKQMPQMGCSPNFLSYSTVICGLCEAKGRMQEAEELVRDMVQNGHNLDATMYSCLLRGYCEEGKEEMALQTVYDIISNNYVINLESFSTFVKKLCAKGYVKEVETIYEEMRRRCPVPEPDASAYKMVLLLAKMS 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g3416 860 TIGRFAM PPR: pentatricopeptide repeat domain 601 630 IPR002885 -
Sto9g3416 860 TIGRFAM PPR: pentatricopeptide repeat domain 529 564 IPR002885 -
Sto9g3416 860 TIGRFAM PPR: pentatricopeptide repeat domain 497 524 IPR002885 -
Sto9g3416 860 TIGRFAM PPR: pentatricopeptide repeat domain 461 495 IPR002885 -
Sto9g3416 860 TIGRFAM PPR: pentatricopeptide repeat domain 741 774 IPR002885 -
Sto9g3416 860 TIGRFAM PPR: pentatricopeptide repeat domain 671 704 IPR002885 -
Sto9g3416 860 TIGRFAM PPR: pentatricopeptide repeat domain 635 669 IPR002885 -
Sto9g3416 860 TIGRFAM PPR: pentatricopeptide repeat domain 706 738 IPR002885 -
Sto9g3416 860 TIGRFAM PPR: pentatricopeptide repeat domain 777 809 IPR002885 -
Sto9g3416 860 TIGRFAM PPR: pentatricopeptide repeat domain 565 599 IPR002885 -
Sto9g3416 860 Pfam PPR repeat 492 523 IPR002885 -
Sto9g3416 860 Pfam PPR repeat 524 554 IPR002885 -
Sto9g3416 860 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 495 525 IPR002885 -
Sto9g3416 860 SUPERFAMILY TPR-like 365 565 IPR011990 GO:0005515
Sto9g3416 860 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 809 843 IPR002885 -
Sto9g3416 860 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 633 667 IPR002885 -
Sto9g3416 860 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 774 808 IPR002885 -
Sto9g3416 860 Pfam Pentatricopeptide repeat domain 762 798 IPR002885 -
Sto9g3416 860 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 563 597 IPR002885 -
Sto9g3416 860 SUPERFAMILY HCP-like 535 773 - -
Sto9g3416 860 Gene3D Tetratricopeptide repeat domain 593 683 IPR011990 GO:0005515
Sto9g3416 860 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 157 848 - -
Sto9g3416 860 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 668 702 IPR002885 -
Sto9g3416 860 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 527 562 IPR002885 -
Sto9g3416 860 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 703 737 IPR002885 -
Sto9g3416 860 Pfam PPR repeat 461 491 IPR002885 -
Sto9g3416 860 Pfam PPR repeat 812 839 IPR002885 -
Sto9g3416 860 Gene3D Tetratricopeptide repeat domain 325 524 IPR011990 GO:0005515
Sto9g3416 860 Gene3D Tetratricopeptide repeat domain 525 592 IPR011990 GO:0005515
Sto9g3416 860 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 598 632 IPR002885 -
Sto9g3416 860 Pfam PPR repeat family 633 681 IPR002885 -
Sto9g3416 860 Pfam PPR repeat family 702 750 IPR002885 -
Sto9g3416 860 Pfam PPR repeat family 562 610 IPR002885 -
Sto9g3416 860 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 738 773 IPR002885 -
Sto9g3416 860 Gene3D Tetratricopeptide repeat domain 684 859 IPR011990 GO:0005515
Sto9g3416 860 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 157 848 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g3416 Sto-Chr9 33768639 33772967 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g3416 462 851 Glycosyltransferase AT1G05670 27.990 8.29e-55 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g3416 - - gmx:100802054 801.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g3416 9 33768639 33772967 Sto9g3416 9 33768639 33772967 ECH