Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g3403 ATGGGTATTCAAAGAGCATCCTGTGCGATTATTTTCTTGACATGGCTTGCTGTGTTTGAAGGAAGCTTGATTGTTGTAAATGGTGAATTCGATTATAAGGATGCTCTCACCAAGTCGCTCATATTCCTGGAGGCACAACGCTCAGGGAAGCTCCCTCCCACTAACAGAGTTCCTTGGAGAGGAGACTCGGGACTCGATGATGGAAAGCTCgctaatGTGGACCTTACTGGAGGATACTATGATGCAGGGGACAATGTGAAATACGGGCTTCCCATGGCTTTCACAGTCACAACTCTATCATGGGCTGCCATTTATTACAAGAATGAATTACAAGCTGCCAAGGAATTGGATAATGTAATTGATGCCATTAAATGGGGCACCGATTATTTTATAAAGGCTAGTCAGAAAAAAGAAGAGGATCACCATTGCTGGGTACGTCCAGAAAATATGCAGACGAAAAGAACAGTTTTGCAGATTGATAACAACACACCCGGCACGGAGATTGCAGCTGAAACTGCCGCAGCAATGGCTTCTTCTTCTATTGTTTTCAGAAGCATAGATCGTCGCTATTCTCGTCGTCTCCTCAACAAGGCCAAACTGCTTTTCAAATTAGCAAAATCGCACAAAGGATCTTATGATGGAGAATGCCCCTTCTACTGCTCTTTCTCAGGGTTTAATGACGAATTGCTGTGGGCATCAACATGGCTATACCTTGCTACGAGGAAGTCAATGTATCTGAAGTACGTTCAAGAGGAATCCATTAGTGCTTATGTGAATGAGTTTAGTTGGGATCTTAAATATGCAGGAGCTCAAATGCTTCTAACTAAGCTACATTATGAAGGAACGCAGAACCTGCAGACATTCAAATACCAAGCCGAAAGTTTTGTATGCTCAGTCCTGCCTGAAAGTCCCTACCACCAGATCAAGTTATCTCCTGgtgGGTACATTCACTTGAGAGATGGAGCCAACACGCAGTATGTGACGGGCACAGCTATGTTGTTTACCTTCTACGGCGATATCCTTGAAGAACACAAAGAAAAAATCACTTGTGGAGACAAACAATTCTCCGCATCGCATCTCTTCCATTTCGCCAAAAAACAaGTTGATTACATATTGGGGAAGAACCCAGAAGGACGATCGTACATGGTAGGATTTGGGAAGAACCCACCAACGCAAGCTCACCACAGAGGGGCATCGGTGCCTGTGATGGGAAAGCATGAAACAGTGAGCTGTCCCATGAGCTTCAAGTGGTTACAAAAAGATGGTCCCAACCCTAATGAGCTCACAGGTGCCATCTTGGGTGGACCTGACAAAAATGACCAATTCCACGACAAACGTTCCGAATCCGTCTTCACTGAACCCTGCACCTATGTCAATTCTCTTATTGTTGGTCCTCTTGCAAAGCTTGCTTCTCTCCATACCGATCATTAG 1431 0.443 MGIQRASCAIIFLTWLAVFEGSLIVVNGEFDYKDALTKSLIFLEAQRSGKLPPTNRVPWRGDSGLDDGKLANVDLTGGYYDAGDNVKYGLPMAFTVTTLSWAAIYYKNELQAAKELDNVIDAIKWGTDYFIKASQKKEEDHHCWVRPENMQTKRTVLQIDNNTPGTEIAAETAAAMASSSIVFRSIDRRYSRRLLNKAKLLFKLAKSHKGSYDGECPFYCSFSGFNDELLWASTWLYLATRKSMYLKYVQEESISAYVNEFSWDLKYAGAQMLLTKLHYEGTQNLQTFKYQAESFVCSVLPESPYHQIKLSPGGYIHLRDGANTQYVTGTAMLFTFYGDILEEHKEKITCGDKQFSASHLFHFAKKQVDYILGKNPEGRSYMVGFGKNPPTQAHHRGASVPVMGKHETVSCPMSFKWLQKDGPNPNELTGAILGGPDKNDQFHDKRSESVFTEPCTYVNSLIVGPLAKLASLHTDH 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g3403 476 SUPERFAMILY Six-hairpin glycosidases 30 474 IPR008928 GO:0005975
Sto9g3403 476 Gene3D - 26 476 IPR012341 GO:0005975
Sto9g3403 476 PANTHER ENDOGLUCANASE 16-RELATED 9 470 - -
Sto9g3403 476 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 370 396 IPR018221 -
Sto9g3403 476 Pfam Glycosyl hydrolase family 9 32 464 IPR001701 GO:0004553|GO:0005975
Sto9g3403 476 PANTHER ENDO-1,4-BETA-GLUCANASE 9 470 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g3403 Sto-Chr9 33696690 33698852 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g3403 22 471 Glycoside Hydrolase AT3G43860 68.615 0.0 661
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g3403 K01179 - gmx:100811509 728.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g3403 9 33696690 33698852 Sto9g3403 9 33696690 33698852 ECH