Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g3357 ATGGACGAAGATCAAATTCTGGGATTTGTCACTGCGTACCTGAGGAAGAAAGGGTTTTCTCAAACGGAGCACGCATTTCAGGAAGAACTCCAACAGAACAAGATTACTTCCTCCGCAAATTCAATTGTCGAACCCGACATTGCCAAGCACATCCTTTCCTTCTCCGaGTTAGAGAGTGGTCCAGCAAGATTCCATGATGGGTATAGCAGACTCAGATCATGGGCGTACAGTTCATTAGATTTGTACAAGCATGAATTACTACGCGTGCTTTATCCGGTATTTATCCATTGTTTTATGGATCTTGTGGCAAAAGGGCATATTCAAGAAGCTCGGAACTTTTTCAATAGCTTCCGTGAAGACCATGAAATGATGCACTTACGAGATCTTCAAAAGTTGGAAGGTGTTCTGTCTCCTTCTCATCTGGAGGAAATGGAATTCGCTCATTCCCTTAGGCAAAGCAAATTCAACATAAAGATATGTGGGTATTCCTACGAGCTTCTGTTGCAACATCTACACAGTACGCAATCCACCACTATACTTGGTATTATTAATGAGCATATTAACTTCCAAGTTACTCCAGGTCAGCCTAGCTCGATTTCTGATGACCCAGAGGCTGTTACCCTCACTGGAAGCAGCCAGGATGCTGCAAACCAGATAAATCAGAAGGAAATACATTGGGGGTTGCTTGAAGACTCTCTTGAAGAACGCTTGGAGAAGGCAGGTGCCTTGCTTTCAGACACTGAAAAGGGGGAAGGAGAAGCCAAAGAGGGGGAAAATGATGAGAGTAAGAAAAGATCAATTGAAGGAGCAAAGCAAGGTACCTCTATCAAGAAAGTAAAGAAGGACAAGGGTGGAAGTACAACAGGGAAAAGTGCAAAACCTGAGGCTCATACTGTAGCTGCTGCACCACGCGTTAAACCAGAACTTTCCATGCCCATAATTCCAACAGAGGTAGAACAGTCCATCCTTGAAGACTTAAGAAATCGTGTACAATTGAGTAGTGTTGCACTGCCTTCAGTTAGCTTCTATACATTTCTCAATACACATAATGGCTTGAGCTGTTCATCAATATCCCATGACGGATCACTGGTTGCTGGAGGATTTTCTGACTCATCCCTGAAGGTTTGGGATATGGCAAAACTTGGACAACAGCCCAGTGGTTCTCTATTGCAAGGTGAGAATGAGACATCACAGAATGAACAAATACTTGGGCAGAGTGGCGGAAGAAGACAGTATACATTATTTCAAGGTCATTCAGGGCCAGTTTACGCTGCCTCTTTTAGTCCTGTTGGAGATTTTATTCTTTCCTCTTCGGCAGACTCAACAAGTATGTCTGCTTATTCTGAACCCCCTAAATATTGCATGGATCATGCAGTTAGATTATGGAACACCAACCTAAACGCCAATCTTGTCTGCTACAAGGGTCACAATTACCCAGTCTGGGATGTTCAGTTTAGTCCTGTAGGACATTATTTTGCCAGTGCTTCACATGACAGAACAGCTAGAATTTGGTCCATGGACAGGATTCAGCCTTTACGAATAATGGCAGGGCACTTGTCTGACGTTGATTGCGTGCAATGGCATGCCAACTGCAACTACATTGCTACTGGCTCCAGTGACAAAACAGTTCGACTATGGGATGTGCAAAGTGGGGAATGTGTCCGGATTTTCATTGGTCATAGGAGTATGATTTTGTCTTTGGCAATGTCTCCTGATGGTCGCTATATGGCATCTGGTGATGAAGATGGCACAATTATGATGTGGGACCTTTCTAGTGGATGCTGCGTCACACCTTTAGTTGGTCACACCTCATGCGTGTGGACACTTGCTTTCAGCTGTGAGGGTACTCTTCTTGCATCTGGATCCGCTGACTGCACGGTGAAATTATGGGATGTGACTTCCAGTACAAAGCTTCCAAGGACTGAGGAAAAGAGTGGGAATACTAACAGACTAAGATCATTGAAAACTTTGCCGACCAAATCCACTCCAGTTTCCTCTTTGCGGTTTTCCCGGAGGAATCTACTTTTTGCAGCTGGAGCTCTTTCAAAAAATGGTTAA 2058 0.4402 MDEDQILGFVTAYLRKKGFSQTEHAFQEELQQNKITSSANSIVEPDIAKHILSFSELESGPARFHDGYSRLRSWAYSSLDLYKHELLRVLYPVFIHCFMDLVAKGHIQEARNFFNSFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRQSKFNIKICGYSYELLLQHLHSTQSTTILGIINEHINFQVTPGQPSSISDDPEAVTLTGSSQDAANQINQKEIHWGLLEDSLEERLEKAGALLSDTEKGEGEAKEGENDESKKRSIEGAKQGTSIKKVKKDKGGSTTGKSAKPEAHTVAAAPRVKPELSMPIIPTEVEQSILEDLRNRVQLSSVALPSVSFYTFLNTHNGLSCSSISHDGSLVAGGFSDSSLKVWDMAKLGQQPSGSLLQGENETSQNEQILGQSGGRRQYTLFQGHSGPVYAASFSPVGDFILSSSADSTSMSAYSEPPKYCMDHAVRLWNTNLNANLVCYKGHNYPVWDVQFSPVGHYFASASHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLSSGCCVTPLVGHTSCVWTLAFSCEGTLLASGSADCTVKLWDVTSSTKLPRTEEKSGNTNRLRSLKTLPTKSTPVSSLRFSRRNLLFAAGALSKNG 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g3357 685 ProSiteProfiles LIS1 homology (LisH) motif profile. 2 34 IPR006594 GO:0005515
Sto9g3357 685 ProSiteProfiles Trp-Asp (WD) repeats profile. 473 514 IPR001680 GO:0005515
Sto9g3357 685 ProSitePatterns Trp-Asp (WD) repeats signature. 534 548 IPR019775 -
Sto9g3357 685 CDD WD40 415 680 - -
Sto9g3357 685 Pfam WD domain, G-beta repeat 413 463 IPR001680 GO:0005515
Sto9g3357 685 Pfam WD domain, G-beta repeat 593 631 IPR001680 GO:0005515
Sto9g3357 685 Pfam WD domain, G-beta repeat 551 589 IPR001680 GO:0005515
Sto9g3357 685 Pfam WD domain, G-beta repeat 470 505 IPR001680 GO:0005515
Sto9g3357 685 Pfam WD domain, G-beta repeat 346 377 IPR001680 GO:0005515
Sto9g3357 685 Pfam WD domain, G-beta repeat 510 547 IPR001680 GO:0005515
Sto9g3357 685 CDD TAF5_NTD2 61 193 IPR007582 -
Sto9g3357 685 SUPERFAMILY WD40 repeat-like 339 680 IPR036322 GO:0005515
Sto9g3357 685 PRINTS G protein beta WD-40 repeat signature 492 506 IPR020472 -
Sto9g3357 685 PRINTS G protein beta WD-40 repeat signature 534 548 IPR020472 -
Sto9g3357 685 PRINTS G protein beta WD-40 repeat signature 618 632 IPR020472 -
Sto9g3357 685 Gene3D - 452 554 IPR015943 GO:0005515
Sto9g3357 685 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 599 634 - -
Sto9g3357 685 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 2 683 IPR037783 -
Sto9g3357 685 ProSitePatterns Trp-Asp (WD) repeats signature. 618 632 IPR019775 -
Sto9g3357 685 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 515 552 - -
Sto9g3357 685 ProSitePatterns Trp-Asp (WD) repeats signature. 576 590 IPR019775 -
Sto9g3357 685 SMART WD40_4 508 547 IPR001680 GO:0005515
Sto9g3357 685 SMART WD40_4 592 631 IPR001680 GO:0005515
Sto9g3357 685 SMART WD40_4 408 463 IPR001680 GO:0005515
Sto9g3357 685 SMART WD40_4 550 589 IPR001680 GO:0005515
Sto9g3357 685 SMART WD40_4 338 377 IPR001680 GO:0005515
Sto9g3357 685 SMART WD40_4 466 505 IPR001680 GO:0005515
Sto9g3357 685 PANTHER CANNONBALL-RELATED 2 683 - -
Sto9g3357 685 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 473 507 - -
Sto9g3357 685 Gene3D TFIID subunit TAF5, NTD2 domain 42 192 IPR037264 -
Sto9g3357 685 MobiDBLite consensus disorder prediction 242 288 - -
Sto9g3357 685 Gene3D - 555 684 IPR015943 GO:0005515
Sto9g3357 685 ProSiteProfiles Trp-Asp (WD) repeats profile. 599 640 IPR001680 GO:0005515
Sto9g3357 685 Gene3D - 325 447 IPR015943 GO:0005515
Sto9g3357 685 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 557 593 - -
Sto9g3357 685 MobiDBLite consensus disorder prediction 242 304 - -
Sto9g3357 685 ProSiteProfiles Trp-Asp (WD) repeats profile. 515 556 IPR001680 GO:0005515
Sto9g3357 685 MobiDBLite consensus disorder prediction 193 212 - -
Sto9g3357 685 ProSitePatterns Trp-Asp (WD) repeats signature. 364 378 IPR019775 -
Sto9g3357 685 ProSiteProfiles Trp-Asp (WD) repeats profile. 415 442 IPR001680 GO:0005515
Sto9g3357 685 Pfam WD40 associated region in TFIID subunit, NTD2 domain 59 187 IPR007582 -
Sto9g3357 685 ProSiteProfiles Trp-Asp (WD) repeats profile. 557 598 IPR001680 GO:0005515
Sto9g3357 685 SUPERFAMILY Taf5 N-terminal domain-like 50 192 IPR037264 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g3357 492 638 Miscellaneous Gene Families AT5G08390 31.293 2.80e-22 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g3357 K03130 - gmx:100805953 1159.82