Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g3351 ATGGCAACCCGAAGGACTTCAAGGCTTTCCAAACCCGCTTTTGCTGCCATAAGCGCTTCCAGGACCTCTCGCTCCTCCTTCGCTTGCGCTGAACGTATATTGTTTCATTTCCCTTCTACTTCGGTTAAGCCAAATGCTAGAAATTTCCTGTCTCAAACTCAGATTATCAATAGAGTTACTGCGACTAATGTTGCCTCCGCCCAATTTCTCTCCCACTCATTCACTCGTCAGTTCCACGCCTCTAATCCCTCGTACGGCGCCGCTGGCAATTCTCAGATTACCCCAACAGAATTCACAGAGCTGGCATGGGAGGGTATCGTTGGTGCTGTTGATGCAGCACGAATCAGCAAACAACAAGTTGTGGAGTCTGAGCATTTAATGAAAGCCTTACTGGAGCAAAAAGATGGTCTAGCCCGAAGAATATTTACTAAGGCAGGATTGGACAACACATCAGTTTTGCAGGCTACTGATGACTTTATATCTCAACAACCAAAGGTAATAGGTGACACAAGTGGACCTGTAATGGGTTCACATATTATTTCTCTCTTGGACAATGCAAGAAAGCACAAGAAAGACATGGGGGATGAATATGTATCGGTTGAGCATTTTTTGTTGGCATTTCAATCAGATAAGAGGTTTGGGCAACAGTTATTCAAAAACCTTCAAATTAGTGAGAAGACTTTGAAGGATGCTATCCAAGCTGTTCGTGGAAGTCAAAGAGTAACTGATCAAAaTCCTGAGGGGAAATATGAAGCGCTTGATAAGTATGGAAATGACCTGACTGAACTTGCTAGGCGTGGCAAACTTGATCCTGTCATAGGTCGAGATGATGAAATTCGACGATGTATCCAGATTCTTTCTAGAAGAACAAAAAACAATCCTGTAATTATTGGTGAACCTGGTGTGGGGAAAACTGCAATTGCTGAAGGATTAGCTCAACGAATAGTGCGTGGAGATGTTCCAGAACCATTGTTGAACCGGAAGTTGATCTCTCTCGACATAGGTTCATTGGTTGCTGGTGCCAAGTATCGTGGAGATTTTGAGGAAAGGTTGAAAGCTGTTCTGAAGGAAGTTACATCTTCAAATgggcaaataattttatttattgatgaGATTCATACTGTTGTAGGTGCAGGGGCTACAACTGGTGCAATGGATGCTGGGAACTTGTTGAAGCCAATGCTTGGGCGAGGTGAACTTCGATGTATTGGAGCAACTACGCTGAATGAGTATAGAAAATACATTGAGAAGGATCCTGCCCTTGAGCGTAGATTTCAACAAGTATTTTGTGGCCAACCCTCAGTTGAAGACACAATATCCATTCTTCGTGGTTTACGTGAACGCTATGAGTTGCATCATGGAGTGAAAATTTCAGATAGTGCACTTGTTTCAGCGGCAGTTCTTGCAGATCGATACATAACAGAACGCTTCTTGCCTGACAAAGccATTGATCTTGTTGATGAAGCTGCTGCAAAGCTAAAGATGGAGATCACTTCTAAGCCAACCGAGTTGGATGAAATAGATAGAGCAGTTCTGAAGTTGGAGATGGAAAAACTGTCCCTGAAAAATGACACTGATAAAGCATCCAAAGAAAGGTTAAGTAAGCTTGAAAATGATTTGAGTTCACTTAAACAGAAGCAGAAAGAATTAACAGAACAATGGGACCGTGAAAAGGTCCTGATGAATCGGATAAGATCAATTAAAGAAGAGATTGATAGAGTTAACCTAGAGATGGAAGCTGCTGAGCGTGAGTATGACCTGAATCGTGCTGCTGAGCTCAAGTATGGAACTCTAATGACCCTTCAGCGCCAATTAGTTGAAGCTGAAAAGAACCTGGATGACTTTCAAAATTCTGGACAATCTTTGCTTCGAGAAGAGGTCACTGATCTTGATATAGCTGAGATTGTAAGCAAATGGACTGGTATACCATTATCAAACCTCCAACAAACAGAGAGAGAAAAGTTAGTCTTGCTGGAACAGGTTCTTCATAAGAGGGTAGTTGGACAGGATATTGCTGTAAAATCAGTGGCTGATGCCATTCGACGTTCAAGGGCAGGCTTATCTGACCCATATCGGCCAATTGCAAGCTTCATGTTCATGGGTCCAACTGGTGTTGGCAAAACTGAGCTTGCAAAGGCTTTGGCTGGTTACCTTTTCAACACAGAAAATGCTCTTGTTAGAATCGATATGAGTGAGTATATGGAGAAACATGCAGTTTCACGTTTGGTTGGGGCCCCACCTGGTTATGTTGGTTATGAGGAAGGTGGTCAGCTAACTGAAGTTATTCGTAGAAGACCTTACTCTGTGGTACTTTTTGATGAAATAGAGAAGGCACATCATGACGTCTTCAACATCTTGTTGCAGTTGTTGGATGATGGAAGGATTACTGATTCCCAAGGAAGGACTGTTAGCTTCACAAATTGTGTGGTGATAATGACTTCGAACATTGGGTCTCATTTCATACTTGAAACTCTTAGAAGTACACAAGATGACAAAGATGCTGTTTATGATCAAATGAAAAGACAAGTGGTTGAGTTGGCTCGGCAGACATTCCGCCCTGAGTTTATGAATCGTATTGATGAATATATTGTTTTCCAGCCTTTGGATTCCAGACAGATCAGCAAAATAGTTGAGCTCCAGATGGAACGGGTGAAGAGCAGGCTCAAGCAAAAGAAAATCGATCTTCATTACACACCAGAAGCTGTTGAACTtctgggtgtattgggttttgatCCAAATTTTGGGGCTAGACCAGTTAAAAGAGTTATACAGCAATTGGTTGAGAATGAGATTGCAATGGGAGTTCTAAGGGGAGATTTTAAAGAAGAGGACTCAATTGTTGTCGATGCTGATGTGTCTCCATCGGCCAAGGGCCTTCCGACCCAAAATAGACTGCTTATCAAAAAGGTGGAGACCCCTGCCATGGATGCCATGGTTGCAAATGACTAG 2949 0.4191 MATRRTSRLSKPAFAAISASRTSRSSFACAERILFHFPSTSVKPNARNFLSQTQIINRVTATNVASAQFLSHSFTRQFHASNPSYGAAGNSQITPTEFTELAWEGIVGAVDAARISKQQVVESEHLMKALLEQKDGLARRIFTKAGLDNTSVLQATDDFISQQPKVIGDTSGPVMGSHIISLLDNARKHKKDMGDEYVSVEHFLLAFQSDKRFGQQLFKNLQISEKTLKDAIQAVRGSQRVTDQNPEGKYEALDKYGNDLTELARRGKLDPVIGRDDEIRRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPEPLLNRKLISLDIGSLVAGAKYRGDFEERLKAVLKEVTSSNGQIILFIDEIHTVVGAGATTGAMDAGNLLKPMLGRGELRCIGATTLNEYRKYIEKDPALERRFQQVFCGQPSVEDTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPDKAIDLVDEAAAKLKMEITSKPTELDEIDRAVLKLEMEKLSLKNDTDKASKERLSKLENDLSSLKQKQKELTEQWDREKVLMNRIRSIKEEIDRVNLEMEAAEREYDLNRAAELKYGTLMTLQRQLVEAEKNLDDFQNSGQSLLREEVTDLDIAEIVSKWTGIPLSNLQQTEREKLVLLEQVLHKRVVGQDIAVKSVADAIRRSRAGLSDPYRPIASFMFMGPTGVGKTELAKALAGYLFNTENALVRIDMSEYMEKHAVSRLVGAPPGYVGYEEGGQLTEVIRRRPYSVVLFDEIEKAHHDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHFILETLRSTQDDKDAVYDQMKRQVVELARQTFRPEFMNRIDEYIVFQPLDSRQISKIVELQMERVKSRLKQKKIDLHYTPEAVELLGVLGFDPNFGARPVKRVIQQLVENEIAMGVLRGDFKEEDSIVVDADVSPSAKGLPTQNRLLIKKVETPAMDAMVAND 982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g3351 982 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 697 715 IPR001270 GO:0005524
Sto9g3351 982 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 742 760 IPR001270 GO:0005524
Sto9g3351 982 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 771 789 IPR001270 GO:0005524
Sto9g3351 982 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 804 818 IPR001270 GO:0005524
Sto9g3351 982 SMART ClpB_D2_small_2 868 956 IPR019489 -
Sto9g3351 982 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 642 948 IPR027417 -
Sto9g3351 982 ProSitePatterns Chaperonins clpA/B signature 2. 727 745 IPR028299 -
Sto9g3351 982 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 251 641 IPR027417 -
Sto9g3351 982 Gene3D - 645 866 IPR027417 -
Sto9g3351 982 TIGRFAM chaperone_ClpB: ATP-dependent chaperone protein ClpB 98 951 IPR017730 GO:0005737|GO:0009408|GO:0042026
Sto9g3351 982 Pfam Clp amino terminal domain, pathogenicity island component 186 237 IPR004176 -
Sto9g3351 982 Pfam Clp amino terminal domain, pathogenicity island component 109 160 IPR004176 -
Sto9g3351 982 SMART AAA_5 693 835 IPR003593 -
Sto9g3351 982 SMART AAA_5 290 434 IPR003593 -
Sto9g3351 982 Coils Coil 526 553 - -
Sto9g3351 982 Pfam C-terminal, D2-small domain, of ClpB protein 868 948 IPR019489 -
Sto9g3351 982 Pfam AAA lid domain 434 536 IPR041546 -
Sto9g3351 982 Pfam AAA domain (Cdc48 subfamily) 692 861 IPR003959 GO:0005524|GO:0016887
Sto9g3351 982 Coils Coil 557 591 - -
Sto9g3351 982 Coils Coil 598 625 - -
Sto9g3351 982 CDD AAA 273 433 - -
Sto9g3351 982 Coils Coil 504 524 - -
Sto9g3351 982 Gene3D - 94 240 IPR036628 -
Sto9g3351 982 Gene3D - 435 640 IPR027417 -
Sto9g3351 982 ProSitePatterns Chaperonins clpA/B signature 1. 386 398 IPR018368 GO:0005524
Sto9g3351 982 Gene3D - 241 434 IPR027417 -
Sto9g3351 982 PANTHER BNAC09G42450D PROTEIN 71 977 - -
Sto9g3351 982 Pfam ATPase family associated with various cellular activities (AAA) 296 428 IPR003959 GO:0005524|GO:0016887
Sto9g3351 982 PANTHER ATP-DEPENDENT CLP PROTEASE 71 977 - -
Sto9g3351 982 SUPERFAMILY Double Clp-N motif 97 248 IPR036628 -
Sto9g3351 982 CDD AAA 667 822 - -
Sto9g3351 982 ProSiteProfiles Clp repeat (R) domain profile. 95 238 IPR004176 -
Sto9g3351 982 Gene3D - 868 957 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g3351 Sto-Chr9 33377350 33385302 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g3351 K03695 - gmx:100782242 1660.97