Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g3299 ATGCGATTTCCGACGAAGCCGTCTCGTACGATCACCACCTTAAGGCTCTCACCCACTCTCGAACTTCCACCTGATACCACAATACGAAGAGTTGCAGAGCAGAGCTGCTTGGCTCTCCTTCAATCCTGCAATTCCTTCAACAAGCTCAcccaaatccaaaccctaatacTCAAGTTGGGTCTTCGAAACAACCCATTAGTCCTCACCAAGTTCGCCTCTACTTCCTCCGAGCTTGATGCCATTCACTATGCTTCGTCTTTTGTATTCTCTTCCGATGCTGATATTCGTGTGTTCGATACGTTCCTGTTCAATACTGTCATTAGGGCATATGCTCAAACGGGTGACTCAAAGGACAAGGCTGTATATTCCTACCGAACAATGCTCGATTATGGAGTTTTTCCTAATAAATTCACTTATCCGTTTGTGCTCAAGTCCTGTGCGGGCCTTGCACGTTTGAATCTAGGCAAATCTGTTCATGCGTCCGTGGTGAAGTTCGGGTTTGATGACGATCTTCATGTCCAGAACACCATGATTCACATGTATTGTTGTTGTGACGAAGGGGTTGAATCTGCCAGAAAGGTGTTCGACGAAAGTCCGAAACTAGATTCAGTGACTTGGAGTGCCATGATTGGCGGGTATGCACGTTTAGGCCATTCTGCAGACGCCATTGCATTGTTTAGGGAAATGCAGGTTAAGGGAGTTCACCCAGATGAGATCACAATGGTATCAGTATTATCAGCGTGTACGAATTTAGGAGCACTTGAGCTTGGGAAGTGGATAGAATCTTATGTTAAGCGAGAAAAATTACAACAACCTGTAGAGCTATGTAATGCTCTAGTAGACATGTTTGCAAAGTGTGGAGATGTAGACAAAGCCATGAAATTGTTCAGACAAATGAACGATCGTACTATAGTTTCATGGACTTCTGTCATTGTTGGTCTTGCAATGCATGGTCGTGGCGAAGAAGCTGTTTCTTTATTTGAAGAGATGATAGAAGCAGGGGTCACTCCTGATGATGTTGCTTTTATTGGGTTGCTTTCTGCTTGTAGTCACTCAGGGCTAGTTGAGACAGGACGTTACTATTTCAATACTATGGTGAAGAAATTCAGCATTATGCCCAAGATAGAACACTATGGTTGTATGGTTGATCTATTGAGTAGAGCTGGACTTGTGAAAGAAGCTCTAGATTTTGTACAACAAATGCCCATTGAGCCAAACCAAATCATATGGAGAAGCATAATCACTGCTTGTCATGCCCGTGGAGAGCTCAAGCTTGGAGAGAGCATCACCAAACGGCTAATAAGAAATGAGCCCATGCATGGATCCAACTATGTGCTACTTTCAAACATTTATGCGAAATTGCTGCACTGGGAGAAGAAAACCAAGGTAAGAGAAATGATGGATATGAAAGGGATGAAGAAGGTTCCAGGGAGCACTATGATTGAGCTAAATAACGAAATGTACGAGTTTGTGGCTGGAGATAAATCACACCATCAGTACAGAGAAATCTATGAAATGGTGGATGAGATGGGGAGGGAGATGAAGAGGGCAGGATATGTGCCTACAACGTCACAGGTATTACTTGACATTGACGAAGAGGACAAAGAAGATTCTTTGAACAGACACAGTGAAAAGCTTGCTATAGCTTTTGCTCTTATAAATACAGCCCCAGGAACACCCATCAGATTTGTGAAGAATTTGCGCGTTTGTGAAGATTGTCATTCTGCTACAAAGTTCATCTCTAAGATATATAACCGAGAGATTGTGGTGAGGGACCGTAATCGCTTCCACCACTTCAAGAATGGTTTGTGTTCATGTGGAGACTTCTGGTGA 1833 0.4283 MRFPTKPSRTITTLRLSPTLELPPDTTIRRVAEQSCLALLQSCNSFNKLTQIQTLILKLGLRNNPLVLTKFASTSSELDAIHYASSFVFSSDADIRVFDTFLFNTVIRAYAQTGDSKDKAVYSYRTMLDYGVFPNKFTYPFVLKSCAGLARLNLGKSVHASVVKFGFDDDLHVQNTMIHMYCCCDEGVESARKVFDESPKLDSVTWSAMIGGYARLGHSADAIALFREMQVKGVHPDEITMVSVLSACTNLGALELGKWIESYVKREKLQQPVELCNALVDMFAKCGDVDKAMKLFRQMNDRTIVSWTSVIVGLAMHGRGEEAVSLFEEMIEAGVTPDDVAFIGLLSACSHSGLVETGRYYFNTMVKKFSIMPKIEHYGCMVDLLSRAGLVKEALDFVQQMPIEPNQIIWRSIITACHARGELKLGESITKRLIRNEPMHGSNYVLLSNIYAKLLHWEKKTKVREMMDMKGMKKVPGSTMIELNNEMYEFVAGDKSHHQYREIYEMVDEMGREMKRAGYVPTTSQVLLDIDEEDKEDSLNRHSEKLAIAFALINTAPGTPIRFVKNLRVCEDCHSATKFISKIYNREIVVRDRNRFHHFKNGLCSCGDFW 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g3299 610 Pfam PPR repeat 377 401 IPR002885 -
Sto9g3299 610 Pfam PPR repeat 276 302 IPR002885 -
Sto9g3299 610 Gene3D Tetratricopeptide repeat domain 367 548 IPR011990 GO:0005515
Sto9g3299 610 Gene3D Tetratricopeptide repeat domain 152 260 IPR011990 GO:0005515
Sto9g3299 610 Gene3D Tetratricopeptide repeat domain 25 151 IPR011990 GO:0005515
Sto9g3299 610 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 303 337 IPR002885 -
Sto9g3299 610 Pfam DYW family of nucleic acid deaminases 518 610 IPR032867 GO:0008270
Sto9g3299 610 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 34 596 - -
Sto9g3299 610 TIGRFAM PPR: pentatricopeptide repeat domain 275 300 IPR002885 -
Sto9g3299 610 TIGRFAM PPR: pentatricopeptide repeat domain 102 135 IPR002885 -
Sto9g3299 610 TIGRFAM PPR: pentatricopeptide repeat domain 305 338 IPR002885 -
Sto9g3299 610 TIGRFAM PPR: pentatricopeptide repeat domain 204 238 IPR002885 -
Sto9g3299 610 Gene3D Tetratricopeptide repeat domain 261 366 IPR011990 GO:0005515
Sto9g3299 610 Pfam PPR repeat family 303 350 IPR002885 -
Sto9g3299 610 Pfam PPR repeat family 202 248 IPR002885 -
Sto9g3299 610 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 272 302 IPR002885 -
Sto9g3299 610 Pfam E motif 422 482 IPR046848 -
Sto9g3299 610 Pfam E+ motif 488 514 IPR046849 -
Sto9g3299 610 PANTHER - 34 596 - -
Sto9g3299 610 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 202 236 IPR002885 -
Sto9g3299 610 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 99 134 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g3299 Sto-Chr9 33050633 33052465 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g3299 103 610 Glycoside Hydrolase AT3G49170 37.817 3.39e-124 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g3299 - - lang:109350726 969.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g3299 9 33050633 33052465 Sto9g3299 9 33050633 33052465 ECH