Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g3218 ATGGGGATAACAGAAGTATGCTCTAGGTTCATTGGAGACTTTTTACAATCATTCAGATGCTCACAACAGAGCTCAAAGCCTAACCTTGATCACAGTCATCCTGCCTGCAATCCCCAGAATGTGCTCAAACTTGATGAAAAGATGGTTAGTGCTCTCATCACTGTGTTTGGTATGGAAAACAATGGAAGAATCAAGAAGGAAAATGCACGTTCATCAGAGGAGGAGAAGCCCTCTTCTGGGTTTGAGCTTCCTAGCCATGGTGGTTTAGAAGATGATGAAGTGCCTGTAGAAGAGGTTCTCAATGGATTGGAAGACATGTCAAAGCGCAGCGAGCTATTACGCGAAGCCTTCAAAATATTTGATGAGGATGGCGATGGATACATAGATGCAATGGAGTTGAAGAGGGTTCTGGATTGCTTGGGTTTGGACAAAGGTTGGGATATGAATACAATTGAGAAAATGGTGAAGGTTGCAGATTTGAACTTTGATGGCAAGGTTGATTTTGGTGAGTTCGAGTTGATGATGGGATAG 531 0.4294 MGITEVCSRFIGDFLQSFRCSQQSSKPNLDHSHPACNPQNVLKLDEKMVSALITVFGMENNGRIKKENARSSEEEKPSSGFELPSHGGLEDDEVPVEEVLNGLEDMSKRSELLREAFKIFDEDGDGYIDAMELKRVLDCLGLDKGWDMNTIEKMVKVADLNFDGKVDFGEFELMMG 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g3218 176 ProSitePatterns EF-hand calcium-binding domain. 121 133 IPR018247 -
Sto9g3218 176 MobiDBLite consensus disorder prediction 64 92 - -
Sto9g3218 176 CDD EFh 113 171 IPR002048 GO:0005509
Sto9g3218 176 Gene3D - 29 176 - -
Sto9g3218 176 SUPERFAMILY EF-hand 90 175 IPR011992 -
Sto9g3218 176 SMART efh_1 112 140 IPR002048 GO:0005509
Sto9g3218 176 SMART efh_1 150 176 IPR002048 GO:0005509
Sto9g3218 176 ProSiteProfiles EF-hand calcium-binding domain profile. 146 176 IPR002048 GO:0005509
Sto9g3218 176 Pfam EF-hand domain pair 112 175 IPR002048 GO:0005509
Sto9g3218 176 PANTHER CALCIUM-BINDING PROTEIN CML42 97 175 - -
Sto9g3218 176 ProSiteProfiles EF-hand calcium-binding domain profile. 108 143 IPR002048 GO:0005509
Sto9g3218 176 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 97 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g3218 Sto-Chr9 32508932 32509495 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g3218 113 175 EF-hand Containing Proteins AT4G20780 57.143 1.30e-16 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g3218 - - gmx:100527700 257.299