Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g3209 ATGGATGTTTCATTAGCCAAGTCATTGATGGGATTGAGAGCGACAACTGGAAATGATGTTCTTAGAGGAATGGAAAATCATTTCGTTCCCGCCTTGAGAAACTGTAAAAAAACTGAGCAACTGAAGAAAATTCATGCCCACATTGTTAAGCTATCATTATCACAGAGCAATTTCTTGGTGACAAAAATGCTGGATGTATGCGACAACTGTGGCGATGTAGATTACGCGACTTTGCTCTTCGAACAACTAGTTGAGCCAAATGTATTTTCCTACAACGCAATTATCAGAACTTACTCCCACAATCATCTCTATAGCTTTGCAATTACTGTGTTCAAGAAAATGATGAGACACCCTCGGAATTCAACTGAAAATCTCATGTTACCGGACAGATTCACATTCCCATTCTTGATAAAATCGTGTGCAGGACTTTTATACCATAGTCTTGGACAACAAGTTCATGCGCAAATTTGTAAGTTCGGGACAACCTCTCATTGTATAACAGAGAACGCACTAATAGATATGTATACAAAATGTGATGATTTAAAGAGTGCTTACAAGGTGTTCGATCAAATTACTGACCGAGATGCAATTTCATGGAATAGCTTGATCTTTGGACACGCACGGTTGGGGCAGATGGAAAGTGCAAAAGCCCTGTTTGACAAAATGCCATGTAGAACAATCGTTTCTTGGACAACGATGATCAGTGGGTACGCAAGAATTGGCTGCTACGTTGATGCATTGGAAATTTTCCGCCAAATGCAAATTGTTGGTATTGATCCCGATGAGATTAGTATTGTATCTGTCTTGCCTGCGTGTGCGCATCTAGGAGCTCTTGAAGTTGGGAAATGGATTCACATGTACTCTGATAAGAATGGATTTTTGAAGAAGACTAGCATTAGTAATGCACTGATTGAAATGTATGCTAAGTGTGGTTGCATTGATCAGGCTCGAaacttgtttgatcaattgaTTGAGAGGGATGTGATTTCTTGGAGTACCATGATTGCAGGACTAGCCAATCATGGAAAAGCTCATGAAGCACTTGAACTCTTTAGAGAGATGCAGAAAACACGGGTCGTTCCAAATGGGATAACTTTCCTTGGTGTTCTAGCAGCCTGCACACATGCAGGTTTATGGAATGAGGGATTGAAATTCTTTGATTCTATGAGAGAGGATTACCATATAGAGCCAGAGATTGAGCACTATGGTTGCTTGGTTGATCTTCTTGGACGGTCAGGACGGATTGATCAGGCTCTTGACATGATAATGAAGATGCCAATGAAGCCAGATTCAAGGATATGGAACTCTGTGTTAAGTTCTTGCAGGACCCACCACAATCTTGAGATTGCTATTATTGCAATGGAGAAACTTGTAGAGATTGAACCAGATGAATCTGGGAGCTATGTTTTGCTTGCTAACATATATGCAGAGCTTGGAATGTGGGAAGGTGTATCTTTAGTTAGGAAACTCATTAGAAGCAAGAGGATAAAGAAAACCCCAGGGTGCAGCTTGATTGAGGTTAACAATGTAGTTGAGGAATTTGTATCAAGTGATGACTCAAAACCCTTCTCAAAAGATATCTTCTGGATCCTCAAAGTGCTGGCTTTGCATCAATATCCTAGCAATGACGAGTTGGAATTTGAACAGGATATAGAACAAGCTTGGTGTTAA 1671 0.3998 MDVSLAKSLMGLRATTGNDVLRGMENHFVPALRNCKKTEQLKKIHAHIVKLSLSQSNFLVTKMLDVCDNCGDVDYATLLFEQLVEPNVFSYNAIIRTYSHNHLYSFAITVFKKMMRHPRNSTENLMLPDRFTFPFLIKSCAGLLYHSLGQQVHAQICKFGTTSHCITENALIDMYTKCDDLKSAYKVFDQITDRDAISWNSLIFGHARLGQMESAKALFDKMPCRTIVSWTTMISGYARIGCYVDALEIFRQMQIVGIDPDEISIVSVLPACAHLGALEVGKWIHMYSDKNGFLKKTSISNALIEMYAKCGCIDQARNLFDQLIERDVISWSTMIAGLANHGKAHEALELFREMQKTRVVPNGITFLGVLAACTHAGLWNEGLKFFDSMREDYHIEPEIEHYGCLVDLLGRSGRIDQALDMIMKMPMKPDSRIWNSVLSSCRTHHNLEIAIIAMEKLVEIEPDESGSYVLLANIYAELGMWEGVSLVRKLIRSKRIKKTPGCSLIEVNNVVEEFVSSDDSKPFSKDIFWILKVLALHQYPSNDELEFEQDIEQAWC 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g3209 556 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 21 543 - -
Sto9g3209 556 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 327 361 IPR002885 -
Sto9g3209 556 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 87 117 IPR002885 -
Sto9g3209 556 Pfam E motif 444 506 IPR046848 -
Sto9g3209 556 TIGRFAM PPR: pentatricopeptide repeat domain 301 328 IPR002885 -
Sto9g3209 556 TIGRFAM PPR: pentatricopeptide repeat domain 329 362 IPR002885 -
Sto9g3209 556 TIGRFAM PPR: pentatricopeptide repeat domain 89 116 IPR002885 -
Sto9g3209 556 TIGRFAM PPR: pentatricopeptide repeat domain 197 223 IPR002885 -
Sto9g3209 556 TIGRFAM PPR: pentatricopeptide repeat domain 228 262 IPR002885 -
Sto9g3209 556 PANTHER OS05G0439300 PROTEIN 21 543 - -
Sto9g3209 556 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 195 225 IPR002885 -
Sto9g3209 556 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 226 260 IPR002885 -
Sto9g3209 556 SUPERFAMILY TPR-like 176 482 IPR011990 GO:0005515
Sto9g3209 556 Pfam PPR repeat 401 426 IPR002885 -
Sto9g3209 556 Pfam PPR repeat 197 224 IPR002885 -
Sto9g3209 556 Pfam PPR repeat 169 193 IPR002885 -
Sto9g3209 556 Pfam PPR repeat 89 116 IPR002885 -
Sto9g3209 556 Gene3D Tetratricopeptide repeat domain 299 521 IPR011990 GO:0005515
Sto9g3209 556 Gene3D Tetratricopeptide repeat domain 151 282 IPR011990 GO:0005515
Sto9g3209 556 Gene3D Tetratricopeptide repeat domain 8 150 IPR011990 GO:0005515
Sto9g3209 556 Pfam PPR repeat family 326 373 IPR002885 -
Sto9g3209 556 Pfam PPR repeat family 226 273 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g3209 Sto-Chr9 32469041 32470711 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g3209 20 528 Glycoside Hydrolase AT3G49170 31.335 1.47e-84 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g3209 - - gmx:100806006 802.742