Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g3174 ATGGAGGACACTGAGAGTTTCGGCTTCTTGGGTGACTTATCTCGTAAAGTAGTCGCCCTAGCTGCGGGTGAAGCACATACCCTCGCTCTAACTGGGGATGGATGTGTGTATTCTTGGGGAAGAGGAATATTGGGGCGACTTGGGCGAGGCTCAGAAGAAGAAGAGCTTTTTCCTGTTGAGGTTAAGTTTGAAACCCCCAATACATCATCGAAAGAACACACTGTCAAAATTGTGGGAATTGCTGCCGGTGCCTATCACAATCTTGCTCTAGCAGATGATGGATCAGTTTGGTGCTGGGGTTACAATATCTGTATCCTTGACGACTCCGATGACACTAAAAGAGATTATTCTCCAGTACCCTGCTTATTGAACAAGTTTCTTGAGTTGCACCCCCCCAATTCTTCAACAAACATTTCAGAAGAAGGCAAAGCATCACTGAAGATATGTTCTGTCAAAGCAGGAGGAATGATGTCTCTGGCCATTGACAACCTTGGGGCCCTATGGATGTGGGGAAACTGCCCACAGAAAAGCAAAGAAGGAGGGTTCTGTCTTGTCAGCAGTTTCACTCCCACACCGGTATGGGATTTTCATGGTCACACTGTTGTCAAGGTTGCATGTGGAAATGAGCATGTTCTGGCACTGGTCAGCTCTGGAGAATCATACAAGGGTGAAGATCTCGTATGCTACTCTTGGGGTAATAACAGCCATGGTCAGTTAGGCTTAGGAGACCAAGAAAGCAGGTCGCATCCAGAAGTTGTAAAAACATTTGACCATGAGTCACCCTGGGCAATTTATGAGGTAGCATGTGGTGCCTATCACACTGCTTTGCTTACTCACAAAAAGAGGCCTAATGACACATTAGAGAGCATGTGCTGGACGTTTGGCCTTGGTGATAATGGGCAACTAGGCCATGGAACAACACAAAATGAATTGTTTCCTACGCCTGTTAAAGATTTGCCACAACGTGTATGTCTGGTTTCTATTGACTGTGGCTTGTTTCATACTTGTGTTGTTTCTTCAGCTGGGGATGTGTGGTCTTGGGGAATGGAAAAGGGTCTTGGCCTATGCCCTGATGCTAGTTATGCTGGAACTGATTCTGGGGATGCTCTTTCTCCCCTTCCTATCGCGTGCAAGCCGTATCAACCAAAATTTCCAGAGCCAATTCAAGTTGCTTGTGGAGCTGCACACACTGTTATTGTTGCGCAGGAGGGATATAAGCTGTGGTCTTGGGGTAGGGGAAGGAGTGGGGTCCTTGGAAATGGTAAGGCAACGGATTTTTACACTCCCACATTAGCCTTATGGCCTCCACTGATAGAGGATTTCAAGCAAGAAGAACTAAGGAGTCCTGGAGAACAAGGTAAGGTCAAAGAAAAGGAGACTGAAGCAGTCACAGAAACAGATGAGAAATTAGCTTCAGCACTGAATGAAATGAAACTTCTTCAGACTAAGCTTGGTGTAATGGAAAGATATGCTAGTATACTTCATGGTTCAATTTTTGGGAAACCTTTTGATGAGCATGATATCCCGGTTTCGTTGAGGAACTCAGGTGTGTTCAACATAGCAAAGGAATGGGAGAATATGTTAGAGGAAGCAGATCAGAGTAAGCTAATTAAGCTGGAAATGTTTTACAGAAGCATGCTTGCTGGTGTGAAAGATAAACTAATGAAGAGAAGGATCAAGGAGATTATAAAGGAATGCCTCCAATCTTCAGAAGTAGAACACTAA 1725 0.4487 MEDTESFGFLGDLSRKVVALAAGEAHTLALTGDGCVYSWGRGILGRLGRGSEEEELFPVEVKFETPNTSSKEHTVKIVGIAAGAYHNLALADDGSVWCWGYNICILDDSDDTKRDYSPVPCLLNKFLELHPPNSSTNISEEGKASLKICSVKAGGMMSLAIDNLGALWMWGNCPQKSKEGGFCLVSSFTPTPVWDFHGHTVVKVACGNEHVLALVSSGESYKGEDLVCYSWGNNSHGQLGLGDQESRSHPEVVKTFDHESPWAIYEVACGAYHTALLTHKKRPNDTLESMCWTFGLGDNGQLGHGTTQNELFPTPVKDLPQRVCLVSIDCGLFHTCVVSSAGDVWSWGMEKGLGLCPDASYAGTDSGDALSPLPIACKPYQPKFPEPIQVACGAAHTVIVAQEGYKLWSWGRGRSGVLGNGKATDFYTPTLALWPPLIEDFKQEELRSPGEQGKVKEKETEAVTETDEKLASALNEMKLLQTKLGVMERYASILHGSIFGKPFDEHDIPVSLRNSGVFNIAKEWENMLEEADQSKLIKLEMFYRSMLAGVKDKLMKRRIKEIIKECLQSSEVEH 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g3174 574 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 267 277 IPR000408 -
Sto9g3174 574 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 165 217 IPR000408 -
Sto9g3174 574 SUPERFAMILY RCC1/BLIP-II 13 119 IPR009091 -
Sto9g3174 574 Pfam Regulator of chromosome condensation (RCC1) repeat 33 90 IPR000408 -
Sto9g3174 574 Pfam Regulator of chromosome condensation (RCC1) repeat 292 338 IPR000408 -
Sto9g3174 574 Pfam Regulator of chromosome condensation (RCC1) repeat 229 277 IPR000408 -
Sto9g3174 574 SUPERFAMILY RCC1/BLIP-II 144 435 IPR009091 -
Sto9g3174 574 MobiDBLite consensus disorder prediction 447 466 - -
Sto9g3174 574 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 226 280 IPR000408 -
Sto9g3174 574 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HERC2-LIKE PROTEIN 11 573 - -
Sto9g3174 574 PRINTS Chromosome condensation regulator RCC1 signature 35 51 IPR000408 -
Sto9g3174 574 PRINTS Chromosome condensation regulator RCC1 signature 204 220 IPR000408 -
Sto9g3174 574 PRINTS Chromosome condensation regulator RCC1 signature 331 349 IPR000408 -
Sto9g3174 574 PRINTS Chromosome condensation regulator RCC1 signature 400 421 IPR000408 -
Sto9g3174 574 Coils Coil 456 483 - -
Sto9g3174 574 MobiDBLite consensus disorder prediction 447 467 - -
Sto9g3174 574 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 342 403 IPR000408 -
Sto9g3174 574 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 289 341 IPR000408 -
Sto9g3174 574 Gene3D - 4 224 IPR009091 -
Sto9g3174 574 Gene3D - 225 443 IPR009091 -
Sto9g3174 574 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 11 573 - -
Sto9g3174 574 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 34 93 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g3174 Sto-Chr9 32212352 32215077 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g3174 - - gmx:100815199 852.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g3174 9 32212352 32215077 Sto9g3174 9 32212352 32215077 ECH