Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g3148 ATGAATTTTGGTTTTAGGTTAAATCTCAGGTGTAGTAGTGTTCCTGTTCAGTCTCCTCATTCTTTCACCACTTCACCTTTCAGGCTTTCTTCATCTTCTGGTGAGTTCTATTGCTTCACTGAGCTCTTCATATTCCATTTTAGTATGATTCAcgattttCTGGAGGCAGGGAAGCTTCTTTCAATCCCACGGGGTTATCTTCGCTCTCAACGGTTTATGAGGAAGGAGAAACTTTCCAAAGAGACTTTCGAAGGGCATCCAGTTGTTCATCATCAGTTTTGGAAACCCTGGATGGTACACAAAAGAAAGAAGTCTTTGAATCGTGTGCATGAAATGATTGATAAAACTCAAATGCCTTTTGGAGAGGAAATATTTACAACTTCTACAAGCTTCCAGTCATTCAGGGCATCACATTTTCGCTTGTTAATTGAAAACCTAGACATTTTAGAAGAAACTATATCTGATTCTGAAGCACTAAGGTTGGAAAAGGATATCATATTGCAACTAGGAAAGCTTGGAGCACTAGAGTTTTTCAATACTCGTCTGTCCGGATCTCATGAAACCTCATGTTTTGTGGATTTTTCTGACCAACGTCCTGAGCAAGTCGAAGATCATCAGACAAACAGCAAAGTAGATGCCCTCTTGGGTAAAGTTGTTGTACCGTCTAggaggaaaaaggaaaataaaccaagaaGAAAGAGAGCATTAACATCCATTGAGGTTTCTTCTCAATCATTGCCTTCAAAATCTACTCAGGAAGGTCTATTACATCTGCCAGCTTCATCTGCTAAAAGAGCatctaattataaaaatagaagAACGATGATTGCCAAAAAGGAAGCAGAAATGTCAAAAGCAGTGAAGGTTCTGGTGGAGTTGGAGAGAATTAGAGTAGCAATGGAAGAGGATACCGAGCAAGTAGTAAGCTTGAGTAGCTGGGCAGAAGCAGCTGGGGTTGATGAAAAGGTGCTACAGCAGAATTTGCATTATGGCCTATATTGTCGAGATGAGCTTATAAGGAGTACTCGTTCCTTAGTTCTATACCTTGCCAAGAAATACAAGGGTATGGGAATTGCGTCAGAAGATTTGCTTCAGgcaGGATATGTGGGTGTACTCCAAGGTGCAGAGAGATTTGATTGTACAAGAGGCTACAGATTCTCGACTTATGTGCAGTACTGGATAAGGAAATCAATGTCAAGAATGGTGGCACGATATGCTCGGGGAATCTTAATTCCCTGGTCATTGAGCAGGGCAATTAGTCAGATACAGAAAGCACGGAAATCGCTGAAAAGTACTGCCTTCAAATACCCGGATGATTATGAAATTGCAAAAATAACAGGTCTTTCTGTGGATAAAATCAGATCAGCTAGCAATTGTCTGAGAGTAGTCGGTTCAATTAATCAGAAGATAGGGGACTGCTTTAATGTGAAATATATGGAACTCTTACCCGATACGTCAATAGGGAGCCCTGAAGAAGCTGTAATGAAGCAGCACATGAGAAAAGACTTACATAATCTCCTGAATGACTTGGATCCAAGGGAAAAGCAAGTACTAACCCTACGCTTTGGTCTTAATGATCACCAGCCAAGGTCTCTTGAGGATATAGGGAGGCTTTTCCATGTTAGCAAGGAATGGGTGAGGAGGATAGAGAAGAAAGCTCTAACAAAGTTACAGATGGAAGCAACCAACTTAAGGTTAAGTCATTATTTGGATCAGTAG 1719 0.3967 MNFGFRLNLRCSSVPVQSPHSFTTSPFRLSSSSGEFYCFTELFIFHFSMIHDFLEAGKLLSIPRGYLRSQRFMRKEKLSKETFEGHPVVHHQFWKPWMVHKRKKSLNRVHEMIDKTQMPFGEEIFTTSTSFQSFRASHFRLLIENLDILEETISDSEALRLEKDIILQLGKLGALEFFNTRLSGSHETSCFVDFSDQRPEQVEDHQTNSKVDALLGKVVVPSRRKKENKPRRKRALTSIEVSSQSLPSKSTQEGLLHLPASSAKRASNYKNRRTMIAKKEAEMSKAVKVLVELERIRVAMEEDTEQVVSLSSWAEAAGVDEKVLQQNLHYGLYCRDELIRSTRSLVLYLAKKYKGMGIASEDLLQAGYVGVLQGAERFDCTRGYRFSTYVQYWIRKSMSRMVARYARGILIPWSLSRAISQIQKARKSLKSTAFKYPDDYEIAKITGLSVDKIRSASNCLRVVGSINQKIGDCFNVKYMELLPDTSIGSPEEAVMKQHMRKDLHNLLNDLDPREKQVLTLRFGLNDHQPRSLEDIGRLFHVSKEWVRRIEKKALTKLQMEATNLRLSHYLDQ 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g3148 572 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 277 407 IPR013325 GO:0003700|GO:0006352|GO:0006355
Sto9g3148 572 Gene3D - 200 407 - -
Sto9g3148 572 CDD Sigma70_r4 500 558 - -
Sto9g3148 572 PANTHER RNA POLYMERASE SIGMA FACTOR SIGC 97 571 - -
Sto9g3148 572 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 471 570 IPR013324 -
Sto9g3148 572 Pfam Sigma-70 region 3 418 493 IPR007624 GO:0003700|GO:0006352|GO:0006355
Sto9g3148 572 MobiDBLite consensus disorder prediction 222 243 - -
Sto9g3148 572 Gene3D - 410 563 - -
Sto9g3148 572 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 97 571 - -
Sto9g3148 572 Coils Coil 276 296 - -
Sto9g3148 572 Pfam Sigma-70, region 4 506 558 IPR007630 GO:0003700|GO:0006352|GO:0006355
Sto9g3148 572 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 335 558 IPR014284 GO:0003700|GO:0006352|GO:0006355
Sto9g3148 572 PRINTS Major sigma-70 factor signature 362 375 IPR000943 GO:0003700|GO:0006352|GO:0006355
Sto9g3148 572 PRINTS Major sigma-70 factor signature 386 394 IPR000943 GO:0003700|GO:0006352|GO:0006355
Sto9g3148 572 PRINTS Major sigma-70 factor signature 510 522 IPR000943 GO:0003700|GO:0006352|GO:0006355
Sto9g3148 572 PRINTS Major sigma-70 factor signature 531 546 IPR000943 GO:0003700|GO:0006352|GO:0006355
Sto9g3148 572 PRINTS Major sigma-70 factor signature 546 557 IPR000943 GO:0003700|GO:0006352|GO:0006355
Sto9g3148 572 ProSitePatterns Sigma-70 factors family signature 2. 531 557 IPR000943 GO:0003700|GO:0006352|GO:0006355
Sto9g3148 572 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 411 484 IPR013324 -
Sto9g3148 572 Pfam Sigma-70 region 2 338 406 IPR007627 GO:0003700|GO:0006352|GO:0006355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g3148 K03093 - gmx:100802522 633.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g3148 9 32067932 32071551 Sto9g3148 9 32067932 32071551 ECH