Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g3122 ATGGCTTCTCTCCCTTCTTCCCTTGCTATCACTGCCACTCTCAAGCTCCACTCTGATTTCAGAAAATTCCCCCCTACTTCCTTTCCCCTCGAAAAGAAAAGCCAGCAATTCACGCATTTAGATGGAAATTTAGATTCAAGTTCAAGGCATCTGGATTTCCGGGAAGCGCTTTCGCTGATAACAGAGGGCAAAACGGTGGAGACATCTTTCTATGTTCCCTTGTTGGAAGAATGCTTGGACAGGACTTCTGTTTCAGATACACAAATTGTTCATGGTCACATCATCAAAACCGGTACCCATGAAGATGTATTTCTCATGGCGTTTCTGATCAATGTCTATGCAAAATGTGGGAACATGGAAAGCGCACGCAAGGCATTTGACAATATGCCCAGAAGAAATGTTGTTTCATGGACCACGTTAATGGTGGGTTATGTGCAGAATTCGCAGCCAGAGAATGCCATCCGAGTGTTCAATGAATTGTTGGATTCAGGATCTTATCCTTCCAATTACTCTCTTGCTATAGCTCTCAATGCATGTACTTCCATGCATTCTGTGAAGTTAGGGGATCAGGTTCATGCTTTCATTATCAAATATGATATTGACCTTGACACAAGCATTGGGAATGCCCTCTGTAGCTTATATGCCAAATGTGGCAGATTGGATTTTGCTTTAAGAGCATTTAGCAGAATCAAAGAAAAGAATGTCATTTCTTGGACTGCAGCTATTTCTGCCTGCGGTGACAATGGGGAAGCTACCACGGGTTTACGACTTTTTATTGAGATGCTTTCTGAGTACATACAGCCTAATGAGTTTACTTTAACTAGTGTCTTGAGCCTATGTTGTGAAACCCTTTCCCTAGAACTTGGGACTCAGATTCACTCATTTTGTACTAAACTTGGCTATGATTCAAACCTACGTATTAGGAATTCTTTAACGTATTTATACCTCAAATGTGGTTGGATTGATGAGGCTCGAGTGCTGTTTAACAGAATGGATGATGTTAATTTGGTTACATGGAATGCAATGATTGCTGGTTATTCACAAATGATGGAACTCGCAAAGGATGATCTTTCTGCATACCAAAGTGGAAGTGAGGCACTAAATCTTTTCCTGAAGTTAAACAGATCAGGCATGAAACCTGATCTTTTCACCTTCTCAAGTGTCCTAAGTGTCTGTAGTAGACTGGTTGCTTTAGAACAGGGAGAACAATTTCATGCTCAAGCAATCAAAACTGGGTTCTTGTCAGACGTGGTTGTGGGTACTTCACTAATCAATATGTACAATAAATGTGGGAGCATAGAGAAGGCAAGCAAAGCATTTCTAGAGATGTCTACTAGAACTGTGATATCATGGACGTCCATGATTACTGGTTATTCACAGCATGGCCGGTCTCAGCAAGCATTGCAGCTTTTTGAGGATATGAGATTAGCAGGAGTGAGACCAAACCAGATCACTTTTGTGGGTGTTCTATCAGCGTGTAGCCATGCTGGCCTGGTCGATGAAGCACTCAAAAACTTTGAGATCAtgcaaaaagaatacaaaatcaAGCCAGTGATGGACCATTATGCATGCTTGATTGATATGTTTGTCAGGCTTGGTCGGCTAGAGGAAGCTTTCAATTTCATTAAGAAAATGGATTTTGAGCCCAACGAGTTCATTTGGTCAATCTTGATTGCAGGATGTCGAAGCCATGGGAATTTAGAGTTGGGGTTTTATGCTGCCGAACAGTTACTAAGTCTCAGACCAAAAGATACTGAGACGTACGTTTTGTTGTTGAATATGTACCTCACCGCGGGACGTTATAAGGATGTTTCTAGGGTGAGGAAGATAATGAAAGAAGAGAAAGTTGGGAAATTGAATGATTTGAGCTGGATCAGCATCAAAGATAAGGTATATTCATTTAAACCCAACGACAAGGGACATCCTCAGATTTCCACAGTGTATAAGACTCTGGAGGATCTGGAAGCAAAAGCCAAGAATCTTGGATACGAGTCATTAGAAAGTAATGAAATAAgtgaggaagaagaGACCAATGCCATTTATCACAGTGAGAAGCTGGCCATTGCATTTGGGTTGGAGAACTTGCCAAATTCTTCACCGATAAGAGTTATCAAGAGTACAATAATGTGCAGAGATTGCCACAACTTCATTAAGTACGCCTCAAAAGTGACTGGTAGGGAAATCATCATTCGAGATACCAAGCGGCTTCATAAATTTGTTAATGGAAAATGCTCATGTGGGGATTTTGGTGGATTTGTCTAA 2262 0.4058 MASLPSSLAITATLKLHSDFRKFPPTSFPLEKKSQQFTHLDGNLDSSSRHLDFREALSLITEGKTVETSFYVPLLEECLDRTSVSDTQIVHGHIIKTGTHEDVFLMAFLINVYAKCGNMESARKAFDNMPRRNVVSWTTLMVGYVQNSQPENAIRVFNELLDSGSYPSNYSLAIALNACTSMHSVKLGDQVHAFIIKYDIDLDTSIGNALCSLYAKCGRLDFALRAFSRIKEKNVISWTAAISACGDNGEATTGLRLFIEMLSEYIQPNEFTLTSVLSLCCETLSLELGTQIHSFCTKLGYDSNLRIRNSLTYLYLKCGWIDEARVLFNRMDDVNLVTWNAMIAGYSQMMELAKDDLSAYQSGSEALNLFLKLNRSGMKPDLFTFSSVLSVCSRLVALEQGEQFHAQAIKTGFLSDVVVGTSLINMYNKCGSIEKASKAFLEMSTRTVISWTSMITGYSQHGRSQQALQLFEDMRLAGVRPNQITFVGVLSACSHAGLVDEALKNFEIMQKEYKIKPVMDHYACLIDMFVRLGRLEEAFNFIKKMDFEPNEFIWSILIAGCRSHGNLELGFYAAEQLLSLRPKDTETYVLLLNMYLTAGRYKDVSRVRKIMKEEKVGKLNDLSWISIKDKVYSFKPNDKGHPQISTVYKTLEDLEAKAKNLGYESLESNEISEEEETNAIYHSEKLAIAFGLENLPNSSPIRVIKSTIMCRDCHNFIKYASKVTGREIIIRDTKRLHKFVNGKCSCGDFGGFV 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g3122 753 Pfam PPR repeat family 447 494 IPR002885 -
Sto9g3122 753 Pfam PPR repeat family 132 179 IPR002885 -
Sto9g3122 753 TIGRFAM PPR: pentatricopeptide repeat domain 449 482 IPR002885 -
Sto9g3122 753 TIGRFAM PPR: pentatricopeptide repeat domain 135 168 IPR002885 -
Sto9g3122 753 TIGRFAM PPR: pentatricopeptide repeat domain 109 135 IPR002885 -
Sto9g3122 753 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 234 268 IPR002885 -
Sto9g3122 753 PANTHER OS01G0913400 PROTEIN-RELATED 62 682 - -
Sto9g3122 753 Gene3D Tetratricopeptide repeat domain 397 499 IPR011990 GO:0005515
Sto9g3122 753 Gene3D Tetratricopeptide repeat domain 288 396 IPR011990 GO:0005515
Sto9g3122 753 Gene3D Tetratricopeptide repeat domain 54 186 IPR011990 GO:0005515
Sto9g3122 753 Gene3D Tetratricopeptide repeat domain 187 287 IPR011990 GO:0005515
Sto9g3122 753 Pfam DYW family of nucleic acid deaminases 669 749 IPR032867 GO:0008270
Sto9g3122 753 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 447 481 IPR002885 -
Sto9g3122 753 Pfam PPR repeat 309 332 IPR002885 -
Sto9g3122 753 Pfam PPR repeat 522 545 IPR002885 -
Sto9g3122 753 Pfam PPR repeat 212 235 IPR002885 -
Sto9g3122 753 Pfam PPR repeat 337 349 IPR002885 -
Sto9g3122 753 Pfam PPR repeat 236 264 IPR002885 -
Sto9g3122 753 Pfam PPR repeat 421 445 IPR002885 -
Sto9g3122 753 Pfam E motif 564 625 IPR046848 -
Sto9g3122 753 Gene3D Tetratricopeptide repeat domain 500 687 IPR011990 GO:0005515
Sto9g3122 753 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 62 682 - -
Sto9g3122 753 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 133 167 IPR002885 -
Sto9g3122 753 SUPERFAMILY TPR-like 403 593 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g3122 Sto-Chr9 31869671 31872223 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g3122 71 749 Glycoside Hydrolase AT3G49170 35.879 2.49e-151 461
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g3122 - - gmx:100781103 1084.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g3122 9 31869671 31872223 Sto9g3122 9 31869671 31872223 ECH