Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g3109 ATGGCGACGTTCGAACTATACCGAAGGTCGACGATCGGAATGTGCCTCACCGAGACCTTGGATGAGATGGTTCAGAATGGTACTCTTAGCCCTGAGATTGCTATTCAAGTTCTTGTCCAGTTCGATAAGTCTATGACAGAAGCTCTGGAAACTAATGTTAAGAGCAAGGTCTCAATTAAGTTTGATTTAGACAGTAGGATCCCTATTTGCATAACATTCAAAAAGGGACATCTACATACGTACAGATTCTGCGACAATGTTTGGACCTTCATCCTACAAGATGCTTTGTTCAAGAATGAAGATTCCCAAGAGAATGTAGGACGGGTTAAAATAGTGGCATGTGACTCAAAGTTGCTCTCGCAGTAG 366 0.4235 MATFELYRRSTIGMCLTETLDEMVQNGTLSPEIAIQVLVQFDKSMTEALETNVKSKVSIKFDLDSRIPICITFKKGHLHTYRFCDNVWTFILQDALFKNEDSQENVGRVKIVACDSKLLSQ 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g3109 121 PIRSF TFIIA_gamma_hum 62 121 IPR003194 GO:0005672|GO:0006367
Sto9g3109 121 PIRSF TFIIA_gamma_hum 1 70 IPR003194 GO:0005672|GO:0006367
Sto9g3109 121 Gene3D - 3 54 IPR009083 GO:0005672|GO:0006367
Sto9g3109 121 PANTHER TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2 1 121 IPR003194 GO:0005672|GO:0006367
Sto9g3109 121 SUPERFAMILY Transcription factor IIA (TFIIA), alpha-helical domain 4 54 - -
Sto9g3109 121 CDD TFIIA_gamma_N 4 51 IPR015872 GO:0005672|GO:0006367
Sto9g3109 121 Pfam Transcription initiation factor IIA, gamma subunit 75 116 IPR015871 GO:0005672|GO:0006367
Sto9g3109 121 Gene3D - 71 120 IPR009088 GO:0005672|GO:0006367
Sto9g3109 121 Pfam Transcription initiation factor IIA, gamma subunit, helical domain 4 49 IPR015872 GO:0005672|GO:0006367
Sto9g3109 121 PANTHER TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2 1 121 - -
Sto9g3109 121 CDD TFIIA_gamma_C 71 117 IPR015871 GO:0005672|GO:0006367
Sto9g3109 121 SUPERFAMILY Transcription factor IIA (TFIIA), beta-barrel domain 75 117 IPR009088 GO:0005672|GO:0006367
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g3109 Sto-Chr9 31787554 31790266 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g3109 K03123 - fve:101306952 199.904
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g3109 9 31787554 31790266 Sto9g3109 9 31787554 31790266 ECH