Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g3105 ATGTTGCGGGAGAGGTTTGCACACCGTTATAGTCGGACCCTTTTTGGTATGTATCCCAGAAGTCGTAGAGGTGAAACTTCTAGACGTGGTGAAGGTATTGGTTCTGGCCTGGAAGGTGCTGGGGGAAGCATTTCTTCACGCAGATCTCTTGGAGCTAAGGTTGTTGAAGCTGATGGAGCACCTCTAGTTGACGTGGAAGCTTTGCATGCTATGATTCGTTTATTTCGTGTAGTTCAGCCACTCTATAAAGGCCAATTACAGAGGCTTCTTTTGAATCTTTGTGCCCATAGCGAAACCAGAACTTCTTTGGTGAAAATTCTCATGGACCTACTTATGCTTGATGTAAGAAAGCCTGAAAGTTACACTAGAGCAGTTGAGCCACCGTATAGGCTATATGGCTGTCAGAGTAATGTAATGTACTCGCGTCCTCAATCTTTCGATGGAGTTCCTCCCTTGCTCTCCCGCCGCATACTTGAAACTCTCACTTATCTTGCTCGAAACCATCCatatgtggcaaaaattttgCTTCAGTTTAGGCATCATCATCCTACCCTGAGAGAACCGGATAATGCCAACAATGCGCGTGGCAAAGCAGTGATGGTTGTTGGAGATGAAGCTGACAGTGACAATAATGGATACATAACCATTGCAATGCTTTTAAGTCTTTTGAACCAGCCCCTTTATTTGAGGAGCGTCGCCCATCTTGAGCAGCTGCTAAATCTACTAGAGGTTATTATTGATAGTGCTGGAAGCAAGTCTAGTCCATCTGACAAACTTCTGAGTTCTACTTTAGAGCCATCATCAGGTCCTCAAATTTCTGCAATGGAGGCGGAAGTGAATACAGATCCTGATGTTATATCTTCTGGGGTTGATACATCTGCTAAGGTTGTTGATtcctccaaacccaaaacctctgGTAATCCTAAGGAATGTGAGATTCAGAGAGTATTATGTAACCTTCCACAAGCAGAACTTCGGCTTTTGTGCTCCTTGCTTGCACAAGAAGGTTTGTCAGATAATGCATATACTCTTGTGGCTGAGGTAATGAAGAAATTAGTGGCCATTGCTCCTACTCATTGTCAGCTTTTTGTCACTGAGCTGGCAGGAGCAGCTCGAAACATGACTTCATCTGCAATGGATGAGTTACGCGTTTTCAGTGAAGCAATTAAAGCTCTTCTTAGCACAACATCTTCTGATGGAGCTGCAATTTTAAGAGTTCTGCAAGCCTTGAGTTCCCTTGTCACCTCACTAAATGAGAAAGAGGGTGATAAAATTGCCCCTCCCGCTCTTTCTGAGGTTTGGGAAATCAATTCAGCTTTAGAGCCTTTGTGGCATGAACTGAGCTGTTGCATTAGCAAGATAGAGTCATACTCAGAGTCTGCCTCTGATTTGTTCACCCCTTCCAGAACCTCTGTGTCTAAACCGTCCAGTGTAACACCTCCACTTCCGCCAGGCTCTCAAAATATCCTACCATACATAGAATCTTTCTTTGTGGTTTGTGAGAAGCTGCATCCTGCTCAGCTGGGTGCTAATCATGACCTGGGTATTCCTGTTATTTCTGATGTTGAAGATGCCAACACCTCAGCTACTCAACAGAAAACATCTGCACCTGCTGTGAAAGTTGAGGAGAAAAATGCTGTTTTTGTCAAGTTCTCAGAGAAGCATAGGAAGCTattaaatgcttttattaggcaAAATCCTGGTTTGCTCGAGAAATCTTTCTCCCTCATGCTAAAGGTTCCAAGATTTATCGATTTTGATAACAAGCGTTCCCACTTCCGATCAAAGATAAAGCATCAGCATGATCATCATCACAGCCCCTTAAGAATATCAGTTAGAAGGGCTTATGTTTTAGAAGATTCTTATAATCAGCTTCGTATGAGATCCACTCAAGATTTGAAGGGAAGGTTGACTGTTCACTTCCAAGGGGAGGAAGGTATTGATGCAGGCGGGCTTACAAGGGAATGGTATCAGTTATTGTCCAGAGTTATTTTCGATAAAGGAGCACTACTTTTCACAACAGTGGGCAATGAATCAACATTTCAACCAAATCCCAACTCTGTTTACCAAACAGAACATCTTTCTTATTTCAAATTTGTTGGAAGAGTGGTTGCAAAAGCATTATTTGATGGTCAGCTATTGGATGTCCATTTTACTCGCTCATTCTACAAGCACATACTAGGGGTTAAAGTTACATATCATGATATTGAAGCCATTGATCCTGACTACTTCAAAAATTTGAAGTGGATGCTTGAGAATGATATTAGCGATGTTCTGGATCTTACCTTTAGCATAGACGCAGATGAAGAAAAGCTGATCTTATATGAAAGGACAGAAGTGACTGATTATGAGTTGATTCCTGGTGGACGGAATATCAAAGTTACCGAAGAAAATAAGCATCAGTATGTTGATTTGGTTGCTGAGCACCGGTTGACTACTGCCATTCGGCCTCAAATAAATGCTTTCTTAGAAGGATTCAATGAATTGATTCCGAGGGAGTTGATATCTATATTCCATGACAAAGAGCTGGAATTATTGATCAGTGGACTTCCTGATATTGATTTGGATGACTTGAGAGCAAATACTGAATATTCTGGATACACTGCTGCATCGCCAGTTATCCAATGGTTTTGGGAGGTTGTTTATGGTTTCAGCAAAGAAGATAAGGCTCGACTGTTGCAGTTTGTGACAGGCACATCCAAGGTTCCATTGGAAGGTTTCAGTGCTCTTCAAGGAATTTCCGGATCTCAGAAGTTTCAGATACACAAAGCATATGGGAGTCCTGATCACTTGCCCTCTGCTCACACCTGTTTCAACCAACTAGATCTGCCGGAGTATCCATCTAGACAACAGTTGGAAGAGAGGTTACTTCTTGCAATTCATGAGGCAAATGAGGGGTTTGGATTTGGTTGA 2913 0.4157 MLRERFAHRYSRTLFGMYPRSRRGETSRRGEGIGSGLEGAGGSISSRRSLGAKVVEADGAPLVDVEALHAMIRLFRVVQPLYKGQLQRLLLNLCAHSETRTSLVKILMDLLMLDVRKPESYTRAVEPPYRLYGCQSNVMYSRPQSFDGVPPLLSRRILETLTYLARNHPYVAKILLQFRHHHPTLREPDNANNARGKAVMVVGDEADSDNNGYITIAMLLSLLNQPLYLRSVAHLEQLLNLLEVIIDSAGSKSSPSDKLLSSTLEPSSGPQISAMEAEVNTDPDVISSGVDTSAKVVDSSKPKTSGNPKECEIQRVLCNLPQAELRLLCSLLAQEGLSDNAYTLVAEVMKKLVAIAPTHCQLFVTELAGAARNMTSSAMDELRVFSEAIKALLSTTSSDGAAILRVLQALSSLVTSLNEKEGDKIAPPALSEVWEINSALEPLWHELSCCISKIESYSESASDLFTPSRTSVSKPSSVTPPLPPGSQNILPYIESFFVVCEKLHPAQLGANHDLGIPVISDVEDANTSATQQKTSAPAVKVEEKNAVFVKFSEKHRKLLNAFIRQNPGLLEKSFSLMLKVPRFIDFDNKRSHFRSKIKHQHDHHHSPLRISVRRAYVLEDSYNQLRMRSTQDLKGRLTVHFQGEEGIDAGGLTREWYQLLSRVIFDKGALLFTTVGNESTFQPNPNSVYQTEHLSYFKFVGRVVAKALFDGQLLDVHFTRSFYKHILGVKVTYHDIEAIDPDYFKNLKWMLENDISDVLDLTFSIDADEEKLILYERTEVTDYELIPGGRNIKVTEENKHQYVDLVAEHRLTTAIRPQINAFLEGFNELIPRELISIFHDKELELLISGLPDIDLDDLRANTEYSGYTAASPVIQWFWEVVYGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSPDHLPSAHTCFNQLDLPEYPSRQQLEERLLLAIHEANEGFGFG 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g3105 970 SUPERFAMILY Hect, E3 ligase catalytic domain 599 962 IPR035983 GO:0004842
Sto9g3105 970 CDD HECTc 608 968 IPR000569 GO:0004842
Sto9g3105 970 Pfam HECT-domain (ubiquitin-transferase) 659 969 IPR000569 GO:0004842
Sto9g3105 970 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 1 969 - -
Sto9g3105 970 Gene3D Hect, E3 ligase catalytic domain 730 814 - -
Sto9g3105 970 ProSiteProfiles HECT domain profile. 629 970 IPR000569 GO:0004842
Sto9g3105 970 Gene3D Hect, E3 ligase catalytic domain 851 970 - -
Sto9g3105 970 SMART hect_3 627 970 IPR000569 GO:0004842
Sto9g3105 970 MobiDBLite consensus disorder prediction 250 270 - -
Sto9g3105 970 MobiDBLite consensus disorder prediction 21 41 - -
Sto9g3105 970 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UPL2-LIKE ISOFORM X1 1 969 - -
Sto9g3105 970 Gene3D Hect, E3 ligase catalytic domains 581 847 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g3105 Sto-Chr9 31753022 31757500 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g3105 - - gmx:100802630 1590.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g3105 9 31753022 31757500 Sto9g3105 9 31753022 31757500 ECH