Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g3104 ATGGATCGGGAAGCTATTCTGACGATCTTGATAACAAAATCTCTCGGCGTTGTTGCCTGGCCTCCATTGAGTTTGCTTTGTCCCTTGTACGCTTCTATTCGGGCCATGGAGAGTGATTCTCGCTCCGATAAACGGCGATGCCTTGCTTTTTGGACtatattttctttgtttaagaTCGTCGAATGGGGGCTTGCTGGGTTATTCAGCTGGCACCCACGGTGGCCTCATGTGAAAGGGATGGCAACTATCTTGCTAGTGTTCCCTTATTTTAGTGGTGCATCATTTATCTATACTTGCTTCTTTAAGCAATATTGTATTGACTACATATGTAAAAGGTCGTGGAACATCTTCAGTCAAAGGAGCACAAGTTGCATACTGGACAATAACAGCAAACTTCTTGATATTTCTGACAGGAcaataattaaaagtaaattGCAAGAGGAGAAGCCCGTAATATATCAGGGCAGTTATGATCCTGGCCGTGAGTCgaagaaaagaaattataacAAGTCAACTGGTAAGAAAAAAATCCAGAAGGAATGGAGCTGTGCTTTATGCCAAATTAGCACTTCCAGTGAAAATTGCCTAGGGAAACATCTTCAAGGAAAGAAACATAAAGCTAAGGAAGATGACTTGAGTGTAGAGTTATGTGTAACAAAGAGCACGTACATGTTATCATCTACTGCTACTCGCAAGAGAACCAAAGGAATGGTTCTACTAGAGAATTTCAACCAAATTGCAAATCTTTTGAATCCGGTTTCCAGAACCATCAGATGGTGTGGATGGACAAAGCCAGAGTTTGGATGGACAAAATTGAATACTGATGGTtctataaataaagaaaatgctGGTTTTGGTGGCTTGCTTCGTGATCACAAGGGTGAACCATTATGTGCATTTGTCTCTAAAGTTCCACAAGGAGATATTTTCTTGGTTGAGCTATGGGCTATATGGAGAGGCCTTGTTCTTGCCTTGGGTCTTGGGATTAAAGTAATATGGGTGGAGTCTGATTCAATGAGTGTTGTGAAAACCATCAACAAAGAGCAACCTCCATGTCTTAGAGCTTGTAGCTGCATAAGATACATAAGGAAACTTCTAAGTAAGTTTGAAAAGTATCAGGTTTCTCACACATGGCGTGAAACTAATAGAGCGGCGGATCATCTTGCAAAGATGGTCCTTTGGGGAAATGATGTCGTTCTATGGCCGGATGATTTTCCAACTAGCCTGTGCAATATTATTAAAGAAGATGCCAAAGGAAAGAAATATCCTAGATGGTGA 1278 0.3967 MDREAILTILITKSLGVVAWPPLSLLCPLYASIRAMESDSRSDKRRCLAFWTIFSLFKIVEWGLAGLFSWHPRWPHVKGMATILLVFPYFSGASFIYTCFFKQYCIDYICKRSWNIFSQRSTSCILDNNSKLLDISDRTIIKSKLQEEKPVIYQGSYDPGRESKKRNYNKSTGKKKIQKEWSCALCQISTSSENCLGKHLQGKKHKAKEDDLSVELCVTKSTYMLSSTATRKRTKGMVLLENFNQIANLLNPVSRTIRWCGWTKPEFGWTKLNTDGSINKENAGFGGLLRDHKGEPLCAFVSKVPQGDIFLVELWAIWRGLVLALGLGIKVIWVESDSMSVVKTINKEQPPCLRACSCIRYIRKLLSKFEKYQVSHTWRETNRAADHLAKMVLWGNDVVLWPDDFPTSLCNIIKEDAKGKKYPRW 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g3104 425 SUPERFAMILY Ribonuclease H-like 269 398 IPR012337 -
Sto9g3104 425 SUPERFAMILY beta-beta-alpha zinc fingers 174 212 IPR036236 -
Sto9g3104 425 CDD RNase_H_like 272 390 IPR044730 -
Sto9g3104 425 Pfam TB2/DP1, HVA22 family 28 104 IPR004345 -
Sto9g3104 425 PANTHER HVA22-LIKE PROTEINS 5 424 IPR004345 -
Sto9g3104 425 Pfam Zinc-finger of C2H2 type 181 205 - -
Sto9g3104 425 Gene3D - 269 393 IPR036397 GO:0003676
Sto9g3104 425 Pfam Reverse transcriptase-like 273 391 IPR002156 GO:0003676|GO:0004523
Sto9g3104 425 PANTHER PROTEIN A, PUTATIVE ISOFORM 1-RELATED 5 424 - -
Sto9g3104 425 Gene3D Classic Zinc Finger 159 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g3104 Sto-Chr9 31747754 31750369 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g3104 262 393 Glycoside Hydrolase AT2G33160 33.333 2.65e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g3104 - - lang:109359207 521.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g3104 9 31747754 31750369 Sto9g3104 9 31747754 31750369 ECH