Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g3010 ATGGAGCATTTTAATAACGATGATCTTGAATACGTTGACGCTGACTATTATGACGTCCCTGATTTTGAAGACGATGATTCTTTCCCTGACAATGGCCCACACACTAACCGTGCTTCTTATTCTGCCGACTCCGACTTTGAAGATGATTTTGAACTGCAGAGCAACTCCAAGACTGATACGTCTGCCTTGGAAGCCAGACAGGGGAAAGATATCCAGGGAATTCCATGGGAGAGGCTTAATTATACTAGAGACAAATACCGTGACACTCGATTGAAGCAGTATAAGAACTATGAGAACCTCTCACGCTCTCGCGAGGACCTCGATAAGGAGTGCCTGCAAGTGCAGAAAGGGAAGACCTTCTATGACTTCCAGTTCAATACGAGGATTGTCAGATCAACAATTGTGCATTTTCAGCTCAGGAATTTGTTATGGGCAACATCGAAGCATGATGTATACCTTATGCAAAACTATTCAGTGATGCATTGGTCCTCTTTGCTACGAAGGGGAAAAGAAGTACTTAATGTGGCAAAACCCATTGTACCAACCCACAAGTGCCCTGGATTTTTGGCTCAGCCTGTATCTAGAGTGCAAATTAGCACCATGGCTGTTAAGGAAAATTTGATGGTAGCAGGCGGTTTCCAGGGTGAGCTGATTTGCAAGAATCTGAATCGTTCTGGAGTTGCATTCTGCAGTAAAATAACTACCGATGATAATGCTATAACCAATGCCGTGGATGTTTACCGCAATCAGAATGGGTCGTTGAGGGTCATGACAGCGAATAACGACGCCCAAGTACGGATTTTGGATGCAGAGAATTTTAGTTCTCTTGCTTGTTTCAAGTATGACTGGTCCGTTAACAGTACTTCCGTTAGTCCGGATGGAAAGTTATTGGCTATTCTTGGGGATAGTGCCGATTGCTTGATAGCTGATGCTAACACCGGAAAGGTTATTGGCAACCTAAGAGGGCACTTGGACTATTCTTTTGCCTCTGCTTGGCACCCAGATGGGCGAATTTTGGCTACTGGGAATCAGGATACAACATGTAGGTTGTGGGACATTAGAAATCTTTCACAGTCCATGGCTGTGTTAAAGGGAAGAATGGGTGCAATAAGAGCCCTAAGGTTCACTTCTGATGGACGGTTTTTGGCGATGGCTGAACCAGCAGACTTCGTCCATATTTTTGACTCTAACTGTGGTTATGCACATGCACAAGAGATTGATTTGTTTGGTGAGATTGCTGGTATATCATTTAGCCCGGACACTGAGGCTCTATTTGTTGGTATTGCTGATCGCACCTATGGTAGCTTGTTAGAGTTCAACAGGAAGCATTCCAATCAATATTTAGATTCCATATTTTAG 1359 0.4378 MEHFNNDDLEYVDADYYDVPDFEDDDSFPDNGPHTNRASYSADSDFEDDFELQSNSKTDTSALEARQGKDIQGIPWERLNYTRDKYRDTRLKQYKNYENLSRSREDLDKECLQVQKGKTFYDFQFNTRIVRSTIVHFQLRNLLWATSKHDVYLMQNYSVMHWSSLLRRGKEVLNVAKPIVPTHKCPGFLAQPVSRVQISTMAVKENLMVAGGFQGELICKNLNRSGVAFCSKITTDDNAITNAVDVYRNQNGSLRVMTANNDAQVRILDAENFSSLACFKYDWSVNSTSVSPDGKLLAILGDSADCLIADANTGKVIGNLRGHLDYSFASAWHPDGRILATGNQDTTCRLWDIRNLSQSMAVLKGRMGAIRALRFTSDGRFLAMAEPADFVHIFDSNCGYAHAQEIDLFGEIAGISFSPDTEALFVGIADRTYGSLLEFNRKHSNQYLDSIF 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g3010 452 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 320 355 - -
Sto9g3010 452 ProSiteProfiles Trp-Asp (WD) repeats profile. 320 361 IPR001680 GO:0005515
Sto9g3010 452 ProSitePatterns Trp-Asp (WD) repeats signature. 339 353 IPR019775 -
Sto9g3010 452 SUPERFAMILY WD40 repeat-like 116 432 IPR036322 GO:0005515
Sto9g3010 452 PANTHER OS03G0386000 PROTEIN 1 452 - -
Sto9g3010 452 SMART WD40_4 272 310 IPR001680 GO:0005515
Sto9g3010 452 SMART WD40_4 313 352 IPR001680 GO:0005515
Sto9g3010 452 SMART WD40_4 356 395 IPR001680 GO:0005515
Sto9g3010 452 MobiDBLite consensus disorder prediction 20 49 - -
Sto9g3010 452 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 1 452 - -
Sto9g3010 452 Gene3D - 208 449 IPR015943 GO:0005515
Sto9g3010 452 Pfam WD domain, G-beta repeat 315 352 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g3010 Sto-Chr9 31082165 31086871 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g3010 276 432 Miscellaneous Gene Families AT5G08390 27.389 2.17e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g3010 - - qsu:112038073 737.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g3010 9 31082165 31086871 Sto9g3010 9 31082165 31086871 ECH