LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto9g2995	ATGGCGCTAGAATACTTCCCTGCTTTACGCCTCCTCCTCCGTCGTGTATACTGCTTCACTCATTCTCCTCCACCGCGCCCCGGTGCCGTTTTACGGTTAAATCCTTCTATATGTTCTAACTCTCTTTTTTCctctaaaccctcaaacccGACCTTCAAAGCTTTTGAATCACATGCCACTTCTAAAGAGAATTACACTTTTGTTCTGAAAAAAGATGAGCGCTTGGCGGAGCCTGTTGGTGCTGCTAATGAGCTTGGGCGTGTTCAGAATACAAGCACAATTGCGGCCATTGTCACGTCCTTGGGCGGTCCCCCTGGTGCTGTGGGAATCGTTCGACTTTCGGGGCCTTCTGCTGTTGCTATTGTTGCTCGAGTATTTCGACCTgcgagaaagaggaagaagaagacatgGCAGCCCACAAGCCATGTTGTGGAGTATGGTGTGGTGCTCGACTCAGATGGGAATGTGATCGATGAGGTTTTAGCGGTACCAATGTTAGCCCCGAGGTCTTATACTCGTGAAGACGTGATTGAGCTCCAATGTCATGGGAGTGAAGTATGTCTACGCCGTGTACTGAGAACTTGTTTGGAAGAAGGAGCAAGACTTGCCGAACctggcGAATTTACTCTTCGTGCTTTTCTAAATGGTCGGTTAGATTTATCCCAAGCTGAAAATGTTGGAAGACTAATAACAGCCAAATCTGTAGCTGCTGCAGATGCAGCCCTGGCTGGAATTCAGGCATTACTGAAATCCATTATTTATTGGACACTTGAACAGGGTGGTTTCTCTTCTCTTGTCAAATCACTAAGAATACAGTGCATTGAACTGCTTACTGAGATTGAAGCTCGTTTAGATTTTGATGATGAGATGCCACCTCtagatttaaatttaatcatGGATAAAATACATAGTATGTCACAAGATATAGCAATTGTTGGCCGTCCAAATGTTGGCAAGTCAAGCCTTCTTAATGCATGGAGCAAAAGTGATAGGGCTATAGTTACTGAAATTGCTGGAACTACCCGGGATGTGATTGAAGCAAGTGTTAGCATCAATGGTATTCCTATTACCCTTCTTGATACTGCAGGAATCAGGGATACTGATGACATTGTAGAAAAGATTGGCGTAGAAAGATCTGAAGCAGTTGCCATGGGTGCTGACTTGATTATCATGACTGTCAATGCTGTTGAAGGGTGGACTTTGGAAGACACCAAACTCCTAGAAAGGATTCAATCCAACAAGAGGTCAATAGGATCGTCCACCCCAGCAATTCTTGTGGTCAACAAGATAGACCGTGCTCCTTCTGCCGAGACTGAATGGATCAAAAGTCGGAATTTTTTCAGTAAGCATGTATTTACATGTGCTATCACTGGTGAAGGATTACAAGAGTTGGAGAGAGCAGTGTTGGAGTTAGTGGGTCTTAACAACATTCCTACTGGTGGTCGTAAATGGACTGTTAATCAGAGACAATGTGAACAACTTGTTCGAACCAAGGAAGCTTTCGGGAGACTAAAAGCGTCGATAGAGGAGAAACTACCTCTGGATTTCTGGACAGTTGATTTGAGGGATGCCGCCCTAGCCCTTGGGCAGATCAGTGGAGAAGATATATCGGAAGAGATCTTATCCAATATATTTGGCAAGTTCTGTATTGGTAAATAG	1659	0.428	MALEYFPALRLLLRRVYCFTHSPPPRPGAVLRLNPSICSNSLFSSKPSNPTFKAFESHATSKENYTFVLKKDERLAEPVGAANELGRVQNTSTIAAIVTSLGGPPGAVGIVRLSGPSAVAIVARVFRPARKRKKKTWQPTSHVVEYGVVLDSDGNVIDEVLAVPMLAPRSYTREDVIELQCHGSEVCLRRVLRTCLEEGARLAEPGEFTLRAFLNGRLDLSQAENVGRLITAKSVAAADAALAGIQALLKSIIYWTLEQGGFSSLVKSLRIQCIELLTEIEARLDFDDEMPPLDLNLIMDKIHSMSQDIAIVGRPNVGKSSLLNAWSKSDRAIVTEIAGTTRDVIEASVSINGIPITLLDTAGIRDTDDIVEKIGVERSEAVAMGADLIIMTVNAVEGWTLEDTKLLERIQSNKRSIGSSTPAILVVNKIDRAPSAETEWIKSRNFFSKHVFTCAITGEGLQELERAVLELVGLNNIPTGGRKWTVNQRQCEQLVRTKEAFGRLKASIEEKLPLDFWTVDLRDAALALGQISGEDISEEILSNIFGKFCIGK	552

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sto9g2995	552	Pfam	50S ribosome-binding GTPase	308	429	IPR006073	GO:0005525
	Sto9g2995	552	Pfam	MnmE helical domain	220	549	IPR025867	-
	Sto9g2995	552	ProSiteProfiles	TrmE-type guanine nucleotide-binding (G) domain profile.	306	473	IPR031168	-
	Sto9g2995	552	Gene3D	-	309	480	IPR027417	-
	Sto9g2995	552	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	170	468	IPR027417	-
	Sto9g2995	552	CDD	trmE	309	473	IPR031168	-
	Sto9g2995	552	TIGRFAM	mnmE_trmE_thdF: tRNA modification GTPase TrmE	106	552	IPR004520	GO:0003924\|GO:0005525\|GO:0006400
	Sto9g2995	552	Gene3D	Probable tRNA modification gtpase trme; domain 1	80	217	IPR027266	GO:0005515
	Sto9g2995	552	PANTHER	TRNA MODIFICATION GTPASE GTPBP3, MITOCHONDRIAL	91	552	-	-
	Sto9g2995	552	Gene3D	tRNA modification GTPase MnmE domain 2	218	552	IPR027368	-
	Sto9g2995	552	SUPERFAMILY	TrmE connector domain	218	552	-	-
	Sto9g2995	552	TIGRFAM	small_GTP: small GTP-binding protein domain	308	434	IPR005225	GO:0005525
	Sto9g2995	552	Hamap	tRNA modification GTPase MnmE [mnmE].	92	552	IPR004520	GO:0003924\|GO:0005525\|GO:0006400
	Sto9g2995	552	PANTHER	TRNA MODIFICATION GTPASE GTPBP3	91	552	-	-
	Sto9g2995	552	Pfam	GTP-binding protein TrmE N-terminus	93	217	IPR018948	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sto9g2995	Sto-Chr9	30922450	30926629	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sto9g2995	K03650		-	gmx:100818096	751.125

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Sto9g2995	9	30922450	30926629	Sto9g2995	9	30922450	30926629	ECH