Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2990 ATGGCGCTTCGATTTGTACTGTGCTTATTACTGGTGGAGAGTACGGTGGGGCTCACATTTTCTTCCAAGCTCATACACGTATTTTCCGACGAGGCTAAGGCTGTGTGGGGTAATAGAGGCAAGAATGTTTCGGTTGAGTCGTGGCCCAAGAGGGATAGCTCCGAGTATTTCAGGTTGCTTCTGGGAAACGATTTGACGCGGCAGAGGATGAAGCTGGGTTCTCAGTATGACACACTCTATCCTTCTCAGGGAAGTCGCACCTTGTTCTTCGGCAATGTATTTGATTGGTTGCATTACACATGGATTGATATAGGGACTCCAAATGTTTCTTTCCTTGTTGCATTGGATGCTGGAAGTGATCTGCTCTGGGTCCCATGTGATTGCATAGAATGTGCTCCCTTGTCTGCTAATTATTACAATGTGCTGGATAGGGATCTCAGCGAGTATAGCCCATCATTGTCAAGCACCAGCAGACATCTGCCTTGCAGCCATCAGTTGTGTAATCCAAGTTCCACATGCAAAAGTCCTAAGGAGCCCTGCCCTTATATTACTCAGTACTACTCTGCAAATACCTCGAGTTCTGGATTTCTTATTGAAGACAAATTACATTTGGCATCATATGGAAAACATGCTGCACAGACTTCTGTAAAAGCCTCAGTCATTTTAGGTTGTGGTAGGAAACAGAGTGGTGGCTATTTAGAAGGAGCTGCTCCTGATGGTGTCATGGGGCTAGGACCTGGAAGCATTTCAGTTCCAAGTCTTCTGGCAAAGGCAGGGCTTATTCAGAATTCTTTCTCGCTTTGctttaatgagaatgattctGGAAGAATCCTCTTCGGTGACCAAGGGCATGCCACCCAACAAACTACACCATTCTTGCCTGTAGATGGGGAATTTGTTGCTTATTTTGTTGGAGTGGAGAGCTTTTGTGTTGGGAGTTCGTGTCTCAAGAAAACTGAACATCAAGCACTTATTGACACTGGCACTTCTTTCACATATCTTCCCAATGAAGTTTATAATTTAGTTGTTTCGGAGTTTGACAAACAAGTAAATGCAGCCAGGATTATCCTCCAAGAATTCCCATGGGAGTACTGCTATAACGCCAGTATGCAGGAGTTGATTAATATTCCCATGATTAAACTCACTTTTTCTAGGAATCAGAGTTTTCCAATTCATAATGCCATGTTTACTCATCCTGCCAGCCAGGAATATACTATCGCTTGTTTGACTTTAATGCAGACTGATGACAATTATGGTACTATTGGACAGAACTTCTTGAAGGGTTATCACATGGTTTTTGATAGGGACAATTTGCGGTTTGGCTGGTCAAGTTCCAACTGTGCAGGTAAAGATAGAGCAAATTTGACATCGCCATGGAATGGTGGATCACCAAACCCTTTACCAGCCAATCAGCAGCAGAGTATCCCTAAGACACATTCTGTGCCACCTGCTGTTGCTGGACCCGCTTTCCCAAAACCGGCCGCCGGAGCCCCGCCCGCATCCGTTGCCACCTGGCATTGTTTAAATTTGTTGTCATTATTAGTGTATCCCCTTTTGTTCTGGTTATCCCATTAA 1575 0.4406 MALRFVLCLLLVESTVGLTFSSKLIHVFSDEAKAVWGNRGKNVSVESWPKRDSSEYFRLLLGNDLTRQRMKLGSQYDTLYPSQGSRTLFFGNVFDWLHYTWIDIGTPNVSFLVALDAGSDLLWVPCDCIECAPLSANYYNVLDRDLSEYSPSLSSTSRHLPCSHQLCNPSSTCKSPKEPCPYITQYYSANTSSSGFLIEDKLHLASYGKHAAQTSVKASVILGCGRKQSGGYLEGAAPDGVMGLGPGSISVPSLLAKAGLIQNSFSLCFNENDSGRILFGDQGHATQQTTPFLPVDGEFVAYFVGVESFCVGSSCLKKTEHQALIDTGTSFTYLPNEVYNLVVSEFDKQVNAARIILQEFPWEYCYNASMQELINIPMIKLTFSRNQSFPIHNAMFTHPASQEYTIACLTLMQTDDNYGTIGQNFLKGYHMVFDRDNLRFGWSSSNCAGKDRANLTSPWNGGSPNPLPANQQQSIPKTHSVPPAVAGPAFPKPAAGAPPASVATWHCLNLLSLLVYPLLFWLSH 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2990 524 Pfam Xylanase inhibitor N-terminal 99 281 IPR032861 -
Sto9g2990 524 Gene3D Acid Proteases 91 280 IPR021109 -
Sto9g2990 524 Pfam Xylanase inhibitor C-terminal 317 443 IPR032799 -
Sto9g2990 524 CDD pepsin_like 102 442 IPR034164 -
Sto9g2990 524 PRINTS Pepsin (A1) aspartic protease family signature 104 124 IPR001461 GO:0004190|GO:0006508
Sto9g2990 524 PRINTS Pepsin (A1) aspartic protease family signature 323 334 IPR001461 GO:0004190|GO:0006508
Sto9g2990 524 PRINTS Pepsin (A1) aspartic protease family signature 419 434 IPR001461 GO:0004190|GO:0006508
Sto9g2990 524 Gene3D Acid Proteases 281 452 IPR021109 -
Sto9g2990 524 MobiDBLite consensus disorder prediction 453 479 - -
Sto9g2990 524 SUPERFAMILY Acid proteases 92 447 IPR021109 -
Sto9g2990 524 ProSiteProfiles Peptidase family A1 domain profile. 98 443 IPR033121 -
Sto9g2990 524 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 323 334 IPR001969 GO:0004190|GO:0006508
Sto9g2990 524 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 5 470 - -
Sto9g2990 524 PANTHER ASPARTYL PROTEASES 5 470 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2990 Sto-Chr9 30890452 30894972 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g2990 74 447 Miscellaneous Gene Families AT1G44130 26.933 7.10e-25 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2990 - - lang:109359439 698.353
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g2990 9 30890452 30894972 Sto9g2990 9 30890452 30894972 ECH