Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2980 ATGGATTTCTCGGGTGCTCGGCCGGGTCTATCTCTCGGATTTAACGCGCAGATTTCGTCACCGGCTCTGGCAGGCCCTGTTagtgataatttatttttctttcaactgAATTCGAGCTGTCGTAGTGACTCGAATACAACCCCTTCTATTCCGTTGCAGTTGCTCGAGGAAAAAGACGAGAATGCTAGGGTTAAATAcagcgaagaagaagaagaggaggaggaggatgatgAAGGACTGGACGATGAAACAATCAATTTTATGGGTCAGCCTGTACGTGTGAAGAGAAAGGTAGAGGTACAGTCGAATTTCTCCTCGAATCCTCCGAAGCGGCTCGCCGTCGATTCGGGGCTGGAGGCAAGGCGAGCTTCGGTTCAAGCATGGGGGAATCAGCCACTCGAGGCAGCAGACCCCGAGATTTATGAAATAATGGAGAAGGAAAAGCGGAGACAATTCAAAGGAATCGAATTAATTGCATCTGAGAATTTCGTGTGCAGAGCTGTGATGGAAGCTCTGGGAAGCCATCTGACGAACAAGTATTCTGAGGGTATGCCTGGAGCCAAATACTACACAGGGAATCAACATATTGATCAGATGGAATTGCTTTGCTGTAAGCGTGCATTGGCCGCTTTTCATCTTCATCCCAGCAAGTGGGGCGTGAATGTTCAGCCTTACTCGTGTTCTTCTGCGAACTTCGCGGTCTATACTGGTCTACTGCATCCCGGAGATCGAATTATGGGTTTGGATTCACCGTCGGGTGGGCATTTGAGCCATGGTTATTATGCTAACAGTGGAAAGAAAGTTGCTGCTGCATCGATATTCTTTGAAACTCTACCTTACAGAGTCAATCCTCAAACAGGCTACTTAGACTATGAGAAGCTTGAAGAAAAGGCATTAGATTATCGCCCCAAAATACTTATCTGCGGTGGGAGTTCATATCCTAGAGAATGGGATTACGCAAGGTTTAGGCAGATTGCTGATAAATGTGGGGCTGTTTTGATGTGTGACATGGCTCATATCAGCGGTCTTGTGGCAGCTAAGGAAGTGGCTAGCCCATTCGATTACTGTGATATTGTTACTTCAACAACCCACAAAAGTCTCCGAGGTCCAAGAGGAGGTATCATCTTTTACAGAAGAGGTCCAAAACCAAGGAAGCAAGGCTTGGGTCTTAATCATGGAGATGATAGTAATTATGACTTTGAGGAAAAGATAAACTTTGCTTTATATCCATCCTTACAAGGAGGTCCTCACAATAATCATATTGCTGCCCTTGCCATAGCTTTAAAACAAGTTGCAACTCCGGAATACAAAGTTTATatgcaacaagtgaagaaaaatGCACAGGCATTGGCGTCTGCTCTGCTAAAAAGAAAATGCAAACTGGTCACTGATGGTACTGACAATCATTTGTTGCTCTGGGATCTAACTGCACTCGGCTTAATTGATAGAAACTATGAGAAGGTCTGTGAGGCTTGTAACATCACACTCAACAAATGTGCCATTTATGGTTCTATTTCACCGGGAGGAGTGAGAATCGGTACTCCTGCAATGACATCAAGAGGTTGCTTAGAGGATGACTTTGAGACCATAGCTGATTTTCTTCTGAAGGCGGCACAGATTACCAGCAATGTACAGAGGGAATATGGGAAATCTTGCAAAGATTTCCTCAGAGGTATTCAGAACAATAAAGATATTGTTGAGCTCAGAAATCAGGTCGAGACATTTGCTTCCCAGCTTGCAATGCCAGCATTTGATGTTTGA 1761 0.4287 MDFSGARPGLSLGFNAQISSPALAGPVSDNLFFFQLNSSCRSDSNTTPSIPLQLLEEKDENARVKYSEEEEEEEEDDEGLDDETINFMGQPVRVKRKVEVQSNFSSNPPKRLAVDSGLEARRASVQAWGNQPLEAADPEIYEIMEKEKRRQFKGIELIASENFVCRAVMEALGSHLTNKYSEGMPGAKYYTGNQHIDQMELLCCKRALAAFHLHPSKWGVNVQPYSCSSANFAVYTGLLHPGDRIMGLDSPSGGHLSHGYYANSGKKVAAASIFFETLPYRVNPQTGYLDYEKLEEKALDYRPKILICGGSSYPREWDYARFRQIADKCGAVLMCDMAHISGLVAAKEVASPFDYCDIVTSTTHKSLRGPRGGIIFYRRGPKPRKQGLGLNHGDDSNYDFEEKINFALYPSLQGGPHNNHIAALAIALKQVATPEYKVYMQQVKKNAQALASALLKRKCKLVTDGTDNHLLLWDLTALGLIDRNYEKVCEACNITLNKCAIYGSISPGGVRIGTPAMTSRGCLEDDFETIADFLLKAAQITSNVQREYGKSCKDFLRGIQNNKDIVELRNQVETFASQLAMPAFDV 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2980 586 Pfam Serine hydroxymethyltransferase 133 533 IPR039429 -
Sto9g2980 586 MobiDBLite consensus disorder prediction 66 83 - -
Sto9g2980 586 Coils Coil 52 72 - -
Sto9g2980 586 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 94 586 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Sto9g2980 586 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 7 94 586 - -
Sto9g2980 586 CDD SHMT 137 575 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Sto9g2980 586 SUPERFAMILY PLP-dependent transferases 122 584 IPR015424 -
Sto9g2980 586 MobiDBLite consensus disorder prediction 60 83 - -
Sto9g2980 586 ProSitePatterns Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 357 373 IPR019798 GO:0030170
Sto9g2980 586 Gene3D - 162 441 IPR015421 GO:0003824
Sto9g2980 586 Hamap Serine hydroxymethyltransferase [glyA]. 132 583 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Sto9g2980 586 Gene3D Aspartate Aminotransferase, domain 1 137 582 IPR015422 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2980 Sto-Chr9 30839992 30843462 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2980 K00600 - gmx:100776419 893.264
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g2980 9 30839992 30843462 Sto9g2980 9 30839992 30843462 ECH