Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2978 ATGCTTATGGCTACTTTATCTCTTCCTCCTGATCCCAAAATCCCTCTCGGAGCTTCCTCGCCGAGACGTTATGATTTCAGAATCCAGAAGCACCCACCAACTCTTACTTGTTCATTGAACAAAACCACTCACCGTTTTCATTTGAATTTAGAAGATGGCTTCGAGGTTAGTCGCCAGATGCAAGCTAACGCTTCGAAAACAGATGGAATCATTACAAACAAGCTTGCTGCTCGTCGCTTCAAGAATAGAGAGTCCTTAGATAATGCCCATAAGATGTTTGAACAAATTCCTAACCCAACTTTGCCTACCTATGCTGCACTCATTGGGTCATATTGCCGGTTGGAGAGGTGGGACGAACTGTTTACTGTGCTCGGTTCAATGATTAACGAGGATATGCTACCTGATAAATATCTTGTTCCTACCATTCTAAAAGCTTGTTCTTCGACGCAGTTGCTGAGAGCAGGTAAGATGATACATGCGTTTGTAACGAGAAAAGAGATGGATTCTGATGTTTTTATTGGAAATGCGCTAATCCACTTTTATTCAAGCTGTGGGGATTTGAAATCTTCTGTAAATGTTTTTGACACAATGAAGGTAAGAGATGTAGTTTCGTGGACTGCCCTAGTTTCAGCTTATATGGATGAAGGTCTTTTAGATGATGCAAAAGAAATTTTCAACTCCATGCACCTGAGCAGAATCAAGCCTGATCTGGTCTTTTGGAATGCACTTATTTCTGGCTTTGCACGCAATGGAGAGACTGCATTAGCTCTAAAGTCATTGCAAGATATGCAAGAAAAAGGACTAaaaccccaggttaacacttggAATGGAATCATTTCTGGCTGTGCTCAAAATGGACTCTTCCAAGATGCTTTACATGTATTGAGTGATATGCTGTGTTTCCCTGAGAAGCCAAATTCTGTTACAATTTCTAGCATCCTTCCTGCTTGTTCGGGCTTGGAAGATCTAGATTTAGGTAGAGCATTTCATGGATATGCTATTAAACATGAGCTTGGTAGGAACTATCATGTGGAAGGATCATTGATTGGCATGTATTCCAAGTGTCAAAAAATAGATTATGCGGAGAAAGTATTCAGGGAGGCAGAAAACAAAAACACTTCCGTGTGGAATGAGATGATTGCAGCTTATGTTGATGAGGGGAAAGTGGGGAAAGCAATGGAGCTTCTTAGATTAATGCAAAATGAAGGACTGAGACCTGATTTAATAACATATAACATATTGCTAGCGGGGCATGCAAGATACAAACAGACAAATGAGATTCATAGGTTGCTGTCAGAGATGGATGAGATGGCAGTGGAGCCAAATATTATATCATGGAATGTCCTAATTTCTGGCTTTCAACAACGTGGCCTTACTTATGAAGCTTTGAAAGTGTTCCAGATATTGCAAGCCCACGTTTGCTCTTCAAAAGTCAGAAGAGGGTTAGCTCAAACGAACTCCATTACTATCGCCAGTGCTCTTTCAGCTTGTGCTGATTTAAATTTAAGGCGTCAAGGGAAGGAAATCCATGGATACTCATTGAGAAAGGGTTTTGAGTCCAACATATACGTGTCAAGTGCATTGGTTGAGATGTATATGAAGAGTGAAGATGTGGAGTCAGCAACAAAAGTATTTAGGAAAACTGTGGATAGAAACACTATTTCTTGGAATAATTTGATTGCAGGCTGTATCAAGAACAGACAGCTGGAGATGGCGATGAAACTATTCTATGAGATGCTGATAGAAGGCCACAAACCCAGCCCAATTACGTTTCTTATACTTCTGCCTGCGGTGTCTATGAGATTAGGGAGACAACTACATGCGTACGTTGTAAAAAGCCAATTCCAAGAACTCGAAAATAACCTTGCAAGTGCATTGGAAGATATGTATGCTAAGAGTGCTGCTGCTGCAGGCTGTTCATTGGACTTGTCAGCAGTCACTGTAGACTTCTGGTTGGCAGGGCCTAAAGAAACCTTGACCAGTGCTGGCCTTAAAACCCGATCTTTAAGCAAAAAACCACGTCTGGATTCTTCAATGATGATCCCCTCCTTGTACTCTTGGGACTCCTCACGTGCAATGGCTTCATTTTCTTCATCTCCATCTAGGCATGCTTCCTTGTATGCTTCAATGAGGGCCATTAAGCTGGATGGGGATGATTTATCATCATTTGTCTGA 2175 0.4097 MLMATLSLPPDPKIPLGASSPRRYDFRIQKHPPTLTCSLNKTTHRFHLNLEDGFEVSRQMQANASKTDGIITNKLAARRFKNRESLDNAHKMFEQIPNPTLPTYAALIGSYCRLERWDELFTVLGSMINEDMLPDKYLVPTILKACSSTQLLRAGKMIHAFVTRKEMDSDVFIGNALIHFYSSCGDLKSSVNVFDTMKVRDVVSWTALVSAYMDEGLLDDAKEIFNSMHLSRIKPDLVFWNALISGFARNGETALALKSLQDMQEKGLKPQVNTWNGIISGCAQNGLFQDALHVLSDMLCFPEKPNSVTISSILPACSGLEDLDLGRAFHGYAIKHELGRNYHVEGSLIGMYSKCQKIDYAEKVFREAENKNTSVWNEMIAAYVDEGKVGKAMELLRLMQNEGLRPDLITYNILLAGHARYKQTNEIHRLLSEMDEMAVEPNIISWNVLISGFQQRGLTYEALKVFQILQAHVCSSKVRRGLAQTNSITIASALSACADLNLRRQGKEIHGYSLRKGFESNIYVSSALVEMYMKSEDVESATKVFRKTVDRNTISWNNLIAGCIKNRQLEMAMKLFYEMLIEGHKPSPITFLILLPAVSMRLGRQLHAYVVKSQFQELENNLASALEDMYAKSAAAAGCSLDLSAVTVDFWLAGPKETLTSAGLKTRSLSKKPRLDSSMMIPSLYSWDSSRAMASFSSSPSRHASLYASMRAIKLDGDDLSSFV 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2978 724 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 372 406 IPR002885 -
Sto9g2978 724 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 442 476 IPR002885 -
Sto9g2978 724 Pfam Pentatricopeptide repeat domain 201 247 IPR002885 -
Sto9g2978 724 TIGRFAM PPR: pentatricopeptide repeat domain 274 306 IPR002885 -
Sto9g2978 724 TIGRFAM PPR: pentatricopeptide repeat domain 240 270 IPR002885 -
Sto9g2978 724 TIGRFAM PPR: pentatricopeptide repeat domain 409 442 IPR002885 -
Sto9g2978 724 TIGRFAM PPR: pentatricopeptide repeat domain 103 135 IPR002885 -
Sto9g2978 724 TIGRFAM PPR: pentatricopeptide repeat domain 554 587 IPR002885 -
Sto9g2978 724 TIGRFAM PPR: pentatricopeptide repeat domain 375 407 IPR002885 -
Sto9g2978 724 TIGRFAM PPR: pentatricopeptide repeat domain 203 236 IPR002885 -
Sto9g2978 724 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 271 305 IPR002885 -
Sto9g2978 724 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 407 441 IPR002885 -
Sto9g2978 724 PANTHER - 30 559 - -
Sto9g2978 724 PANTHER - 555 633 - -
Sto9g2978 724 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 30 559 - -
Sto9g2978 724 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 555 633 - -
Sto9g2978 724 Gene3D Tetratricopeptide repeat domain 199 266 IPR011990 GO:0005515
Sto9g2978 724 Pfam PPR repeat 444 467 IPR002885 -
Sto9g2978 724 Pfam PPR repeat 103 130 IPR002885 -
Sto9g2978 724 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 552 586 IPR002885 -
Sto9g2978 724 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 100 134 IPR002885 -
Sto9g2978 724 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 236 270 IPR002885 -
Sto9g2978 724 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 201 235 IPR002885 -
Sto9g2978 724 Gene3D Tetratricopeptide repeat domain 481 649 IPR011990 GO:0005515
Sto9g2978 724 Gene3D Tetratricopeptide repeat domain 304 480 IPR011990 GO:0005515
Sto9g2978 724 Pfam PPR repeat family 270 317 IPR002885 -
Sto9g2978 724 Pfam PPR repeat family 551 597 IPR002885 -
Sto9g2978 724 Pfam PPR repeat family 371 419 IPR002885 -
Sto9g2978 724 Gene3D Tetratricopeptide repeat domain 49 169 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2978 Sto-Chr9 30831298 30835610 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g2978 173 635 Glycoside Hydrolase AT3G49170 25.591 7.79e-39 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2978 - - qsu:112025088 720.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g2978 9 30831298 30835610 Sto9g2978 9 30831298 30835610 ECH