Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2970 ATGGAAAACGCCGACGTTTTGTTGGGCTTACAGGACTTCCTGGAGCGCATGCGTCAACCTTCCGCGGCAGATTTCGTTAAAGCAATCAAAAGTTTTATTGTTTCATTTTCAAATAATGCTCCTGATCCAGAGAGGGACAGTGCTGCACTACAGGAGTTCCTTGCTAATATGGAAGTCGCTTTCAGGGCTCATCCACTTTGGGCTGGCTGCTCAGAGGAGGAGCTGGAGAGTGCCGGAGAAGGGCTAGAGAAGTATGTCATGACGAAGTTATTTACCCGCCTATTTGCTTCACTACCAAATGATGTAAAAGTTGATAACCAACTTTCTGAAAAGATGGCTTTGCTTCAACAGTTTATTCAACCAGAACATTTGGATATCAACCCAACATTTCAGAATGAAGCAGTGTGGTTGCTCGCACAGCAAGAACTACAGAAGATCAACATGTACAAGGCACCCAGAGACAAACTTGTGTGTATCCTCAGTTGTTGTAAGATCATCAGTAACGGACTGATTGATGATTCTGTTACTTCAAAGGAGAATCCTCCAGGGGCCGATGAATTTCTTCCTGTGCTAATATATGTTATTATAAAGGCAAACCCTCCACAACTGCACTTAAATCTACTGTACATTCAAAGGTTTAGACGCCAATCTCGATTGGTTGCAGAAGCAGCATACTTTTTTACAAACATGTTGTCTTCTGAGTCCTTCATTTCTAACATTGATGCAAAAGCCCTCTCAATGGATGAAACCGAGTTCAAGGGAAACATGGAATCTGCACGTGTTCTTCTTTCTGGACTTTCAACTGATTTGCAAGATCACTCCACTTTAACTGATCCAAACTCTGGACAACTTGCCAGAGCAGAACCTTTTAAGCCCCAAAATAAAGCTTTGAACGATAGTAAGGATACTGCTTTGCAAGCCACATCATCTGAAGCAAAATctgaaaacaaaaaggaaattaCTGAAGATCTGTCGTCAATCAACAAAGTTCCATCTCTATCGGATTTGGAAAACAAAGGTGCAAGTATGCTTTTAGAGGAGAATCAAGTGAATGAGGTTTTCAGGGAGTATCCATATTTGTTTGCTCGTGTTGGTGACATGACAATCAGTGACGTGGAAGACCTGCTAAATAATTACAAACAACTTGTTTTCAACTACGTATGTCTTTCCAAAGGGTTAGATGTTTCTCCTACATTTCATCTGCCTTCTAATCCTCGAAGTCATGTCCAAAACAATGCTGAAACCACAGTAGAGTTTTCAGAAGAATCTGCTGATATGACAAAGGATAGTTCAGATAGGGTTGCACTTTCTGAGGAGAAAAACAATGACTCTAATTTGCCACAGGACGAGACAGTGGCACCTCAAGTTTGA 1371 0.4092 MENADVLLGLQDFLERMRQPSAADFVKAIKSFIVSFSNNAPDPERDSAALQEFLANMEVAFRAHPLWAGCSEEELESAGEGLEKYVMTKLFTRLFASLPNDVKVDNQLSEKMALLQQFIQPEHLDINPTFQNEAVWLLAQQELQKINMYKAPRDKLVCILSCCKIISNGLIDDSVTSKENPPGADEFLPVLIYVIIKANPPQLHLNLLYIQRFRRQSRLVAEAAYFFTNMLSSESFISNIDAKALSMDETEFKGNMESARVLLSGLSTDLQDHSTLTDPNSGQLARAEPFKPQNKALNDSKDTALQATSSEAKSENKKEITEDLSSINKVPSLSDLENKGASMLLEENQVNEVFREYPYLFARVGDMTISDVEDLLNNYKQLVFNYVCLSKGLDVSPTFHLPSNPRSHVQNNAETTVEFSEESADMTKDSSDRVALSEEKNNDSNLPQDETVAPQV 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2970 456 ProSiteProfiles VPS9 domain profile. 102 246 IPR003123 -
Sto9g2970 456 SUPERFAMILY VPS9 domain 11 257 IPR037191 -
Sto9g2970 456 Gene3D VPS9 domain 99 264 IPR037191 -
Sto9g2970 456 Pfam Domain of unknown function (DUF5601) 27 91 IPR041545 -
Sto9g2970 456 MobiDBLite consensus disorder prediction 416 456 - -
Sto9g2970 456 MobiDBLite consensus disorder prediction 296 311 - -
Sto9g2970 456 MobiDBLite consensus disorder prediction 272 323 - -
Sto9g2970 456 MobiDBLite consensus disorder prediction 421 445 - -
Sto9g2970 456 Gene3D - 17 97 - -
Sto9g2970 456 PANTHER RAB GDP/GTP EXCHANGE FACTOR 1 407 IPR045046 GO:0005085|GO:0016192
Sto9g2970 456 SMART vps9_2 135 254 IPR003123 -
Sto9g2970 456 PANTHER BNAC09G47180D PROTEIN 1 407 - -
Sto9g2970 456 Pfam Vacuolar sorting protein 9 (VPS9) domain 138 241 IPR003123 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2970 Sto-Chr9 30789621 30793481 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2970 K20131 - gmx:100810958 634.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g2970 9 30789621 30793481 Sto9g2970 9 30789621 30793481 ECH