Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2874 ATGGAGTTGCCGGAGTGCCCTGTGTGCCTCCAAACCTACAACGAAAAGGACACAATTCCTCGGGTACTTGCCTGTGGCCACTCGGTTTGTGAAGCTTGCCTTGTTGAACTTCCACAGCGATATCCCGATACCATTCGCTGCCCTGCGTGTACCCAACTCGTCAAGTACCCTACTCAGCATGGCCCCTCTGCTCTTCCCAAGAACATCGACCTCCTCAGACTCTGTCTCGAACATCCATCTTCGTCCTCTTCCGATGACTCCCAGAAATCGAAGCAGCATTCCGTAAATAAAGGTGATGATCACTCTCAATTTTTGTGTACTCGGTTCTGGTCGGACGAGTTGTATTCCACATGGAGGGATTGGATTCTTCCACACGACGTCATTTCAATTGAGTCCGAATTCGCTGGCCGTGAAGGTCCTGGTCTTGGCTTTGTTCTACGGGGGCGATTCGGTTCAACTTTTCCGTTGAAAGGTCAGGTTTGcatacaagaaaatcaatgcCTAAGTCTTGCTCCGATTGTTTCTTTGCCGCCTGTAAATCATTCTAAATTCAATTTTAGTTATGTTGCCAGAATTATGATGTGTTTGGAGGGAATGAAAGAGGCTCAGAGGGAAGAGTTAGCTTTGATTCTCAAAGCTTCCATGAAACAGAATAGGATAtgtaaagtttatggtttatggagcGACTTAGTTGGTGGGCTTCTATACTTAGTGTGCGAGAGACACCGTGGTAGTTTTCTTGAGAAGTTTAGTGAGTTGAGAAATGGATTTGTCGGTCTAGCTGGAGATGGATTGAATAGAGATGGATTTGTTAGTTTTTCTATGATAGGTATGAGTATTTGTGAAGCCTTGATCGAATTGCATACAGAAGGTTTGGTTGCTGGCTATTTTGGACGTTCTTGCTTCTGCTCTGATGAGCTCGGTGGcatttattttgatttgaaCGAGGCATTAGCGTCCGGGAGGAAGATTTGTCGTACTCTAATGGATGCTATTTCTATTGGCACTAGCAATACAGTTAAACAAGAAGCAATTTGTGAATATTTCTTGCAAAATGAGTGTTTAGTAAGTCCGGAGCTTTTGTTTGAGTTATTGCCTAAGGACACTATTACACCAGAGAGTGGGTTCACAAGATACCCCATTGGGTATGGTTCTGATGTATGGTCATTGGCTTGTGTTTTGCTGCAGCTTCTATTTGGAAATGCACTCCCTCGGTGTACCCTGGAAAAGAATGAAGAGAAGAAAAGCTTTGACATTTCAGGTAGTTACATTTGTTGGGTGGAGAGAGTTAGTTCCATTTTGGAAGATAAATTGGGACCAGAATATCTGTTGTTGAGGCAAACTCTTTGCAAATGTTTGGAAATAAATCCAGGAAGTCGGCCAGATGCGGTAGATGTTAGGAAATGCATTTGGGAGATGTTGGTAAAACCTCAATTTGATGTTCTAGGCACTTTGGATGTTGCATTAAATAGAAACAGCGTATATTGCTGTTTGATTCTTGGGGAGTTGTGTCAGTTATCTCAGGAATGCTCAAAATCACAGAGAGAATGTGAATTTCAGGACAAAGATAATGGTGGTTGGCCAGATTTTGTTCAAGATGGGGAGGAGAACTCTGATGAAGGCCTATCTAAGGGAATGACTGAGCTTAAAGATTTGCGAGGCCATCTTGATTGTATCACTGGATTAGCTGTTGGAGGAGGATATCTATTTAGCTCCTCATTTGATAAAACTGTCCGTGTATGGTCATTGCAGGACTTTTCCCATTTACACACCTTTAGAGGTCATGAGAATAAAGTCATGGCTTTGGTTTATGTGGATGAAGAAGAACCATTGTGCATAAGTGGTGACAGTGGCGCCGCGATATTCATGTGGGGGTTAACTTCCCCTCTTGGGCAAGATCCATTGAGGAAATGGTATGAACAGAAGGATTGGCGCTTTAGTGGTATCCATGCGATGATTGTTTCCAGAAATCGTTGCCTCTACACTGGAAGTGGAGATAGATCAATAAAAGCTTGGTCATTGAAGGATGGAAATTTGATATGCACAATGGACGGTCATCGAGCTGCAGTTTCCACGCTCGCAATATGTGATGAGGTTCTTTACAGTGGTAGTTGGGATGGAACCATTAGGTTGTGGAGTCTTATTGATCACAGCCTGTTGACAGTGCTGGGGGAAGATGTGCCTGGAGAGATTAAATCTGTCCTGTCTATTACTGCTGATAGACATTTGCTAGTTGTAGCTCATGAGAATGGACGCATAAAGGTCTGGAGAAACGACGTGTTCATGAAGTCCCAAACATTGCATAGTGGTGCAATTTTTGCTATTTGTATTCAGGGGAAATGCCTCTATACCGGAGGTTGGGACAAAAAAGTTAATATACAGGAATTGTCAGGAGATGATTTTCAACTGGTTGTCAATTCAATTGGAGATATTCCTTGCAGTTCTGTTGTAACAGCTATATTATGCTGGCAAGAAAAACTGTTTGTTGGCTTTGCTGACAAGTCTATCAAGGTTTATCATGGGAATCTGAAGAGTTTCAGCTGGTATGCTTCTATTCTAGCTCAAGTTTCAGAGAAATGTCAATAG 2586 0.42 MELPECPVCLQTYNEKDTIPRVLACGHSVCEACLVELPQRYPDTIRCPACTQLVKYPTQHGPSALPKNIDLLRLCLEHPSSSSSDDSQKSKQHSVNKGDDHSQFLCTRFWSDELYSTWRDWILPHDVISIESEFAGREGPGLGFVLRGRFGSTFPLKGQVCIQENQCLSLAPIVSLPPVNHSKFNFSYVARIMMCLEGMKEAQREELALILKASMKQNRICKVYGLWSDLVGGLLYLVCERHRGSFLEKFSELRNGFVGLAGDGLNRDGFVSFSMIGMSICEALIELHTEGLVAGYFGRSCFCSDELGGIYFDLNEALASGRKICRTLMDAISIGTSNTVKQEAICEYFLQNECLVSPELLFELLPKDTITPESGFTRYPIGYGSDVWSLACVLLQLLFGNALPRCTLEKNEEKKSFDISGSYICWVERVSSILEDKLGPEYLLLRQTLCKCLEINPGSRPDAVDVRKCIWEMLVKPQFDVLGTLDVALNRNSVYCCLILGELCQLSQECSKSQRECEFQDKDNGGWPDFVQDGEENSDEGLSKGMTELKDLRGHLDCITGLAVGGGYLFSSSFDKTVRVWSLQDFSHLHTFRGHENKVMALVYVDEEEPLCISGDSGAAIFMWGLTSPLGQDPLRKWYEQKDWRFSGIHAMIVSRNRCLYTGSGDRSIKAWSLKDGNLICTMDGHRAAVSTLAICDEVLYSGSWDGTIRLWSLIDHSLLTVLGEDVPGEIKSVLSITADRHLLVVAHENGRIKVWRNDVFMKSQTLHSGAIFAICIQGKCLYTGGWDKKVNIQELSGDDFQLVVNSIGDIPCSSVVTAILCWQEKLFVGFADKSIKVYHGNLKSFSWYASILAQVSEKCQ 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2874 861 Gene3D - 634 859 IPR015943 GO:0005515
Sto9g2874 861 ProSiteProfiles Trp-Asp (WD) repeats profile. 552 591 IPR001680 GO:0005515
Sto9g2874 861 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 683 714 - -
Sto9g2874 861 SMART WD40_4 676 713 IPR001680 GO:0005515
Sto9g2874 861 SMART WD40_4 631 673 IPR001680 GO:0005515
Sto9g2874 861 SMART WD40_4 585 625 IPR001680 GO:0005515
Sto9g2874 861 SMART WD40_4 545 582 IPR001680 GO:0005515
Sto9g2874 861 SMART WD40_4 716 757 IPR001680 GO:0005515
Sto9g2874 861 SMART WD40_4 758 795 IPR001680 GO:0005515
Sto9g2874 861 PANTHER - 2 839 IPR044715 -
Sto9g2874 861 MobiDBLite consensus disorder prediction 79 99 - -
Sto9g2874 861 Gene3D - 542 633 IPR015943 GO:0005515
Sto9g2874 861 Gene3D Transferase(Phosphotransferase) domain 1 200 474 - -
Sto9g2874 861 SUPERFAMILY WD40 repeat-like 546 839 IPR036322 GO:0005515
Sto9g2874 861 SUPERFAMILY RING/U-box 5 60 - -
Sto9g2874 861 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 86 IPR013083 -
Sto9g2874 861 PRINTS G protein beta WD-40 repeat signature 569 583 IPR020472 -
Sto9g2874 861 PRINTS G protein beta WD-40 repeat signature 660 674 IPR020472 -
Sto9g2874 861 PRINTS G protein beta WD-40 repeat signature 700 714 IPR020472 -
Sto9g2874 861 SUPERFAMILY Protein kinase-like (PK-like) 201 478 IPR011009 -
Sto9g2874 861 ProSiteProfiles Zinc finger RING-type profile. 6 51 IPR001841 -
Sto9g2874 861 ProSiteProfiles Protein kinase domain profile. 139 479 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto9g2874 861 SMART ring_2 6 50 IPR001841 -
Sto9g2874 861 ProSitePatterns Zinc finger RING-type signature. 25 34 IPR017907 -
Sto9g2874 861 PANTHER FINGER (CCCH TYPE) PROTEIN, PUTATIVE-RELATED 2 839 - -
Sto9g2874 861 Pfam RING-type zinc-finger 6 48 IPR027370 -
Sto9g2874 861 ProSiteProfiles Trp-Asp (WD) repeats profile. 683 722 IPR001680 GO:0005515
Sto9g2874 861 CDD RING-HC_TRIM32_C-VII 5 51 - -
Sto9g2874 861 Pfam WD domain, G-beta repeat 548 582 IPR001680 GO:0005515
Sto9g2874 861 Pfam WD domain, G-beta repeat 678 713 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2874 Sto-Chr9 30152658 30156705 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g2874 539 803 Acyl Lipid Metabolism Gene Families AT3G18860 27.740 2.77e-13 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2874 - K03070 lja:Lj1g3v0874380.1 1098.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g2874 9 30152658 30156705 Sto9g2874 9 30152658 30156705 ECH