Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2857 ATGGCATCATCATACTTGGAAGAGATGCGAGAGGCACAGAGAGCACGTGGGCCAGCGAGCATCCTAGCCATAGGCACAGCCAATCCGACGAACTGTATTTACCAAGATGACTTCACTGATTATTACTTCCGAGTCACCAACAGCAACCACATGCCTGGCCTTAAGGCTAAGTTGAAACGCATTTGTGAGAAGTCGATGATCAAGAAGCGTTACATACACCTCACCGAAGAGATGCTGAAAGAAAACCCAAACATATGCGCTTACGAAGAACCGTCACTAAATGCACGTCAGGACATGCTGGTGGTGGAAGTGCCCAAGTTAGGAGAGAAGGCTGCTTCTAAGGCCATTAAGGAATGGGGAAGGCCCAAGTCTGACATCACTCATCTCATCTTTTGCGCCACTTCCGGCGTTGAAATGCCCGGCGCCGACTACCAACTCATCAGGCTCTTAGGCCTCAACCCTTCCACCAAACGCTTCATGCTCTACCACCAAGGTTGCTTCGCCGGAGGCACCGTCCTCCGCCTCGCCAAGGATCTCGCCGAGAACAACGCCGGAGCACGAGTCCTGGTGGTGTGCTCGGAGATCACCGTGGTCACCTTCAGAGGCCCATGCGAGACACACTTGGACTCATTGGTGGGCCAAGCACTGTTTGGAGACGGCGCATCATCGGTGATCGTGGGATGCAATCCAGACACTTCCATCGAACGGCCACTGTTCCATCTGGTGTCGGCGTCAGAGACGATTCTACCAAACTCGGAGGGTGCAATAGAAGGGCACTTGAGGGAAGTGGGGCTCACATTTCATCTGAAGGAAAACGTGCCTCAGCTGATAGCGGACAACATTGGGAAAAGCCTTGAAGAGAACTTCAAGCCCATTGGGATCAACGACTGGAACTCGGTGTTTTGGGTAGCCCATCCAGGTGGGCCCGCCATATTGAACGAAATAGAAGCGAGGCTtgggctgagagaagagaagctGAGAGCCACGAAGCACGTGCTGAGTGAGTATGGGAACATGTCGAGTGCGTGTGTGCTCTTCATTTTGGACGAAATGAGGAAGAGATCGGCGGAGGAGGGCAAGGCCACCACCGGAGAAGGACTCAAGTGGGGCGTTCTTTACGGATTCGGGCCGGGTCTCACCATGGAGAGTTTGGTCCTGCACAGCGTCCCCATAGACATTGGCGCCAATTAA 1191 0.5264 MASSYLEEMREAQRARGPASILAIGTANPTNCIYQDDFTDYYFRVTNSNHMPGLKAKLKRICEKSMIKKRYIHLTEEMLKENPNICAYEEPSLNARQDMLVVEVPKLGEKAASKAIKEWGRPKSDITHLIFCATSGVEMPGADYQLIRLLGLNPSTKRFMLYHQGCFAGGTVLRLAKDLAENNAGARVLVVCSEITVVTFRGPCETHLDSLVGQALFGDGASSVIVGCNPDTSIERPLFHLVSASETILPNSEGAIEGHLREVGLTFHLKENVPQLIADNIGKSLEENFKPIGINDWNSVFWVAHPGGPAILNEIEARLGLREEKLRATKHVLSEYGNMSSACVLFILDEMRKRSAEEGKATTGEGLKWGVLYGFGPGLTMESLVLHSVPIDIGAN 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2857 396 Pfam Chalcone and stilbene synthases, N-terminal domain 7 230 IPR001099 -
Sto9g2857 396 PANTHER CHALCONE SYNTHASE 8 6 393 - -
Sto9g2857 396 Gene3D - 1 237 IPR016039 GO:0016746
Sto9g2857 396 SUPERFAMILY Thiolase-like 237 389 IPR016039 GO:0016746
Sto9g2857 396 CDD CHS_like 18 386 - -
Sto9g2857 396 Pfam Chalcone and stilbene synthases, C-terminal domain 241 390 IPR012328 -
Sto9g2857 396 PANTHER HYDROXYMETHYLGLUTARYL-COA SYNTHASE 6 393 IPR011141 GO:0009058|GO:0016747
Sto9g2857 396 ProSitePatterns Chalcone and stilbene synthases active site. 158 174 IPR018088 GO:0009058|GO:0016746
Sto9g2857 396 Gene3D - 238 393 IPR016039 GO:0016746
Sto9g2857 396 PIRSF PKS_III 5 391 IPR011141 GO:0009058|GO:0016747
Sto9g2857 396 SUPERFAMILY Thiolase-like 7 235 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2857 Sto-Chr9 30016247 30017601 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g2857 73 389 Miscellaneous Gene Families AT2G26640 24.857 2.20e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2857 K00660 - nnu:104591893 635.565