Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2734 ATGGAGAGGTCTAGATCTAAGAGGAACTACTACTATGACCAAGATTATGACTCAGAGACCTTGGCTAGGACCAGACCTCGCTATAATCACCACTACACAACTAGTACCCATCGTCATCGCGGTGGTGGCAGTGGTGGTCGACCTACCAAGGCCCAAGATTCGTCTTTAACGGTTACCACAAATTACCGCATTTTGTGCCACGATATGAAGGCTGGTGGAGTAATTGGCAAGTCAGGTAGCATTATAAAGTCTATTAGGCAGCACACCGGCGCGTGGATCAACGTCCACGAGCTGATCCCTGGCGATGAGGAGCGAATCATTGAGATTTCTGACACGCGCCGGCGAGACCCCGAAGGCCGAATGCCGTCCTTCTCGCCGGCGCAGGAGGCCCTGCTGTTGATTCATGAGAGGATTCTAGAGAGCGATGCCGCGTTTGGGATTggcgaggaggaggaggagtatGGAGGCAGAGGAGGTGGAGGCGGTAACCGCGTCGCAACTAGACTGGTCGTGTCCAGAATGCATGTAGGTTGTTTGTTGGGTAAAGGAGGGAAGATTATTGAACAAATGAGGATTGAAACCAAGACACAGATTAGGATACTTCCTAGGGATCACACGCTACCACGTTGTGTTTCCATGTCCGAAGAAATTGTTCAGCTGAAGAGCTGGAAAGGAGGAATATTCAGCTTCAAAGCTATGTGGCTTTCTTTATCCGGTTTTGCTGTCTTCATTGGTTGGATGTTTAGTTTGGTGCTAACTGCTAGGAGATATCATGTCCTTAAAATCTTTAGCACCGTTGTAGGTGATGCAAATGCTGTGAAGAATGCTATAGTACTCATATCATCACGTTTGAGGGAAAGCCAGCATCGGGATCGCAGTCATTTTCATGGAAGAGTACATTCACCAGAGCGCTTTTTCCCTCCAGATGATGATTATATACCTCATGGGGCAGCTCGTAGATCATCTCTGGATGGGGCAACTTTTGGATCTCGACCTGGCAATATAAGAAGCAATAGCTACCCCTCATCAGGTTACACGATGGAACCAGGGGCCGCTACTGTGGCCGATGATGCACAACCCTTTTATGGAGAGGACATTATTTTCCGGATACTTTGTCCTATGGACAAAGTGGACCGTATTATAGGGGAATCAGATGGATTTGTAGAATTCCTTCAAAATGAAGTAGGCGTGGATGTTAAGCTCAACGATCCCGTGGTTGGTTCTGATGAACAGATAATCATCATTTCTTCGGAGGAGGGTCCTGATGATGAGCTGTTCCCAGCTCAGGAAGCTTTGCTGCATATTCAAACTCGCATTGTTGATCTTGAGCTAGATAAGGACAACATTATAACCACCAAACTTGTTATTCCATCCAGTGATATTGAATGTTTAGATGGACGAGATGCATCACTGTTGGAGATAAGGAGACTCACTGGTGCAAATATTCAAATTCTTCCACGAGAGGAATTACCTCTCTGTGTTTCAAAATCCGATGAGTTGGTGCAGATTGTGGGTGAGATTAAAGCAGCCCGAGATGCTGTTGTTGAGGTGACATCAagattgagaagttatttgtaTAGGGATTTCTTTCAAAGGGATATAGTACCACCATCTGCCCCTGGACCTAATATGGAAACATCTTCCAGCAATATAACTCCTGTTCATGAGGGTTATACTGGCTCTGAAACTCCCACAACCTATCAGAATGCGCAAACTGTGGCAGCTGCACTTCCAATAAAGGAATCGGGAGGACCTAGCACTGATACAGGAAAGCAGAAAGAAGGCGATCGTGATGTGATGAGTAGTTTGACTAGGATTCCTGTACCACTTGTCACTAGAAGTACACTTGAAGTTGTCTTACCGGAGTATGCAGTTCCAAAGCTTACAGCAAAATCCAAAAACAAGCTTGCACAGATAAGCGAGTTGTCAGGAGCCAATGTGACCCTTGTAGAGGATAGACCGGAGGAGACACAGAAGATTATTCAGATATCTGGTACTCCAGAGCAGGCAGAGAGAGCTCAGAGCTTGCTTCAGGGATTTATTTTGAGCAGAGAGCAATCATTGACCCTGCCTGAATGGTCGTTATCTGGTCGGTCTAATCAAACAGTACCGAGTTATAAATTTTCCTGTTGCTTACGCCCCCATAACCCAAATCCTGACAGCTTACAGGACAAAAAGTGTGGGCTACAAGTGAAAACCAACATGGAAGATGAGGCAAAATATTCATGTCTATATTTGAATTCCTGGGATGCTGAGCTTGATGCTTTCTGTGTTGTTGATGCCAATGTCAACCCTGGGGGAGATGATCAATCCATCCAAGATTTGGATGCTCTTTCTTGCTTTCAAAGTACTGATTCAGCTCAAACCAGTTTTCCTAAATCTGAGGCTGCTTTGGATGATGATTTACAATTAACATCTAAACAGAAAGATAAGAGTGAATTCTGGTTTTATGATGACCAATGTGTGGATTTGGGTATGACCAATCTTTTGGCCTCTGAACAATGTGCAAAAGCATCCACTGATCTGAACTCTCATTGGATGGAACCTGAGACAATTAGGCCTTGGTGGCAAACTGCTAGAAAAGATGAGTTGGCTTACTTGGTTTCACAGAGTTCGCTTGACAATATTGAGAACTGTGATCTCCCTCACCCTCAGATTAAGGTTCTTGACCATGAAAACACTCTCTCATCATCTTTAAATCAGAAAGCTGAGACTGTGTTTGGCTATGCATCTGGCATTACAACTTCTGGCTGTTCATTGCAGGATTCAGACATACCTTTAAGGTAA 2787 0.4428 MERSRSKRNYYYDQDYDSETLARTRPRYNHHYTTSTHRHRGGGSGGRPTKAQDSSLTVTTNYRILCHDMKAGGVIGKSGSIIKSIRQHTGAWINVHELIPGDEERIIEISDTRRRDPEGRMPSFSPAQEALLLIHERILESDAAFGIGEEEEEYGGRGGGGGNRVATRLVVSRMHVGCLLGKGGKIIEQMRIETKTQIRILPRDHTLPRCVSMSEEIVQLKSWKGGIFSFKAMWLSLSGFAVFIGWMFSLVLTARRYHVLKIFSTVVGDANAVKNAIVLISSRLRESQHRDRSHFHGRVHSPERFFPPDDDYIPHGAARRSSLDGATFGSRPGNIRSNSYPSSGYTMEPGAATVADDAQPFYGEDIIFRILCPMDKVDRIIGESDGFVEFLQNEVGVDVKLNDPVVGSDEQIIIISSEEGPDDELFPAQEALLHIQTRIVDLELDKDNIITTKLVIPSSDIECLDGRDASLLEIRRLTGANIQILPREELPLCVSKSDELVQIVGEIKAARDAVVEVTSRLRSYLYRDFFQRDIVPPSAPGPNMETSSSNITPVHEGYTGSETPTTYQNAQTVAAALPIKESGGPSTDTGKQKEGDRDVMSSLTRIPVPLVTRSTLEVVLPEYAVPKLTAKSKNKLAQISELSGANVTLVEDRPEETQKIIQISGTPEQAERAQSLLQGFILSREQSLTLPEWSLSGRSNQTVPSYKFSCCLRPHNPNPDSLQDKKCGLQVKTNMEDEAKYSCLYLNSWDAELDAFCVVDANVNPGGDDQSIQDLDALSCFQSTDSAQTSFPKSEAALDDDLQLTSKQKDKSEFWFYDDQCVDLGMTNLLASEQCAKASTDLNSHWMEPETIRPWWQTARKDELAYLVSQSSLDNIENCDLPHPQIKVLDHENTLSSSLNQKAETVFGYASGITTSGCSLQDSDIPLR 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2734 928 PANTHER RNA-BINDING KH DOMAIN-CONTAINING PROTEIN RCF3 3 220 - -
Sto9g2734 928 PANTHER RNA-BINDING KH DOMAIN-CONTAINING PROTEIN RCF3 266 598 - -
Sto9g2734 928 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 605 683 IPR036612 GO:0003723
Sto9g2734 928 Gene3D - 365 525 - -
Sto9g2734 928 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 3 220 - -
Sto9g2734 928 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 266 598 - -
Sto9g2734 928 ProSiteProfiles Type-1 KH domain profile. 613 677 - -
Sto9g2734 928 Pfam KH domain 615 678 IPR004088 GO:0003723
Sto9g2734 928 Pfam KH domain 62 110 IPR004088 GO:0003723
Sto9g2734 928 Pfam KH domain 167 217 IPR004088 GO:0003723
Sto9g2734 928 Gene3D K Homology domain, type 1 58 141 IPR036612 GO:0003723
Sto9g2734 928 ProSiteProfiles Type-1 KH domain profile. 164 200 - -
Sto9g2734 928 ProSiteProfiles Type-1 KH domain profile. 59 131 - -
Sto9g2734 928 Gene3D K Homology domain, type 1 161 289 IPR036612 GO:0003723
Sto9g2734 928 ProSiteProfiles Type-1 KH domain profile. 365 432 - -
Sto9g2734 928 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 442 532 IPR036612 GO:0003723
Sto9g2734 928 CDD PCBP_like_KH 61 135 - -
Sto9g2734 928 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 359 422 IPR036612 GO:0003723
Sto9g2734 928 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 165 291 IPR036612 GO:0003723
Sto9g2734 928 MobiDBLite consensus disorder prediction 22 55 - -
Sto9g2734 928 SMART kh_6 163 285 IPR004087 GO:0003676
Sto9g2734 928 SMART kh_6 58 139 IPR004087 GO:0003676
Sto9g2734 928 SMART kh_6 612 682 IPR004087 GO:0003676
Sto9g2734 928 SMART kh_6 448 522 IPR004087 GO:0003676
Sto9g2734 928 SMART kh_6 364 437 IPR004087 GO:0003676
Sto9g2734 928 MobiDBLite consensus disorder prediction 579 598 - -
Sto9g2734 928 CDD KH-I 615 678 - -
Sto9g2734 928 Gene3D K Homology domain, type 1 612 685 IPR036612 GO:0003723
Sto9g2734 928 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 59 110 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2734 Sto-Chr9 29187877 29195454 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2734 K21444 - gmx:100804167 942.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g2734 9 29187877 29195454 Sto9g2734 9 29187877 29195454 ECH