Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2051 ATGTCCTCCGACGAAGATGAATCAATGTCAGAGCAGGAAGAGCAAACAAAGTCTGGGAAGGAAGATAATGGATCAGTACTTGATTACATCATGAGCTTGGAAAGCGTTCCGTCTAAACTCCCTCCACATCTCGAACTCCTCAAGACGCGAGTTCTCTGCAAGATTGATGCTCCTCAGCATACAGATACCATACAGTACTCTGGCGCCTATGCAGCATTAGGAGTTGATAATAGTATACGGTTGGATAATTTCCGTCAAAACTTCAAAGTTCAAGTGAATCGACTCACAGAGGATGACATAGAGTTTGATATGATTGGAATTGACCCTGCTCTTGCAAATGCATTTCGAAGAATCCTTATAGCAGAGGTTCCAACAATGGCaattgaaagaatatatatgGCAAACAATACTTCAGTTATACAAGATGAAGTTCTTTCCCATAGATTGGGCCTCATTCCAATCGGCGCTGACCCCAGGCTATTTGAATACCCAGAAAATGCAGGAAATGAGAAGAATGAAAAGAACACTATTGTCTTTAAACTCCATGTTCGATGTGAAAGGCAACAGCCTCGTATTACTGTAAAATCAAATGAACTGAAGTGGTTACCTAATGGGAGTGAGCTTCCCTCTGAAGATATCAAACCAAATTCAAGTTCAAAACCAAAAACATTTACATCATTTAGTTGCAGTCAAGATTCCCTTCCTGAATTTTCTGGCAATCCAATTGCTCCTAGGAATTTGGATATTATATTAGCTAAACTTGGACCTGGTCAGGAAATTGAACTTGAAGCTCATGCAGTTAAAGGCATTGGCAGGACACATGCTAAATGGTCCCCAGTTGCCACTGCTTGGTATCGGATGCTTCCAGAGgtTGTACTCTTGAAAGAGGTTGAGGATGAGCTCGCTGAAGAACTCAAAAATAAATGTCCAGTTGGAGTCTTTGATATTGAAGATATTGGGAAAGGTAGAAAAAGGGCAACTGTAGCCAGACCGCGATCATGCACTCTGTGCAGGGAATGTATCAGAGGGGGGAAAGAATGGGAGGATCGTGTGGCCTTACGCCGTGTTAAAGATCATTTCATTTTTACTGTTGAGTCAACTGGAGCATTACCACCAGAAGTACTATTTACTGAAGCTGTGAAGATTCTGGAAGAGAAGTGTGAACGTGTGATTACCGAGCTTTCTTGA 1188 0.4133 MSSDEDESMSEQEEQTKSGKEDNGSVLDYIMSLESVPSKLPPHLELLKTRVLCKIDAPQHTDTIQYSGAYAALGVDNSIRLDNFRQNFKVQVNRLTEDDIEFDMIGIDPALANAFRRILIAEVPTMAIERIYMANNTSVIQDEVLSHRLGLIPIGADPRLFEYPENAGNEKNEKNTIVFKLHVRCERQQPRITVKSNELKWLPNGSELPSEDIKPNSSSKPKTFTSFSCSQDSLPEFSGNPIAPRNLDIILAKLGPGQEIELEAHAVKGIGRTHAKWSPVATAWYRMLPEVVLLKEVEDELAEELKNKCPVGVFDIEDIGKGRKRATVARPRSCTLCRECIRGGKEWEDRVALRRVKDHFIFTVESTGALPPEVLFTEAVKILEEKCERVITELS 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2051 395 CDD RNAP_I_II_AC40 88 393 IPR033901 GO:0001054|GO:0001056
Sto9g2051 395 MobiDBLite consensus disorder prediction 203 225 - -
Sto9g2051 395 SUPERFAMILY RBP11-like subunits of RNA polymerase 86 394 IPR036603 GO:0006351|GO:0046983
Sto9g2051 395 Pfam RNA polymerase Rpb3/RpoA insert domain 131 278 IPR011262 GO:0003899|GO:0006351|GO:0046983
Sto9g2051 395 SMART rpoldneu2 99 393 IPR011263 GO:0003899|GO:0006351
Sto9g2051 395 SUPERFAMILY Insert subdomain of RNA polymerase alpha subunit 124 279 IPR036643 -
Sto9g2051 395 MobiDBLite consensus disorder prediction 1 23 - -
Sto9g2051 395 PANTHER DNA-DIRECTED RNA POLYMERASE 30 395 - -
Sto9g2051 395 Gene3D - 90 386 IPR036603 GO:0006351|GO:0046983
Sto9g2051 395 PANTHER BNAA01G22480D PROTEIN 30 395 - -
Sto9g2051 395 MobiDBLite consensus disorder prediction 210 225 - -
Sto9g2051 395 Coils Coil 380 395 - -
Sto9g2051 395 Pfam RNA polymerase Rpb3/Rpb11 dimerisation domain 101 387 IPR011263 GO:0003899|GO:0006351
Sto9g2051 395 Hamap DNA-directed RNA polymerase subunit Rpo3 [rpo3]. 89 394 IPR022842 GO:0003899|GO:0006351
Sto9g2051 395 Gene3D - 125 275 IPR036643 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2051 K03027 - gmx:100786622 644.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g2051 9 24477855 24481529 Sto9g2051 9 24477855 24481529 ECH