Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2040 ATGGCGCAACTATTCCACCTTGGCCTTCCTTTCTCTGTAGAATCTCACAAAATTTCagcttcttcttccaagtcccTGAAGCTTGTCCCCACTATCTCCGCCTCAAACATATCCTTTTCCACCACCAGAAAAGGTTCTGCCAATCGATTGCCCAAGACCCAGAAGTTGAATCTAGAGGTTTCTCCTCACAGAGCAGTGTCAGCGGTTAGGTTGATGAGAATAGAGCTTGGTGGTGCTTTTGCTGACCTTTTGAATGAAAAAGGGAAGGGTTCGGGTGAGAACGAGATGGCATATGTTGAAAGAACGCTTGGGTTTCGCACCAGGGAGTTAAATGATCAAGATCTCAGGCTGGTTACAGATATTGTTGGAGGCACAATCCGTtggagaagatatcttgatcATTTGATTAGTTCAATAAGTCACGATAAAGATATATCTAGCATGGAACCCCTACTGTTACAGAAAGTGGCCAAAATTGGCTTCTATGAGATTGTCAAGTTAGATATGCCGCATTATGCTGTTGTAGATGAGAATGTGAGGCTTGCTAAAGTTGCTCTCAGACCTGGTGCTGGCAACATGGTCAATGGAATCCTCCGAAAGCTTGCGGTGCTTAAGGAAAATGAATCTCTTCCTTTGCCCAAAGTAGAGGGTGATGATCGTGCTCAAGCACGTGCTCTTGCTACTCTTCACTCACATCCTGTTTGGATGGTAAGAAGATGGACAAAGTATCTTGGGCAGGAAGAAGCCATcaaattgatgatgtggaacaacaATGAACCCAGTTTCAGCTTAAGGGCAAACCATGCAAGAGGTTTTTCAAGAGCGGACCTTGTGGCTCAACTTAATGAATTGAAGGTTCCACACAAGCTTTCATCTCATCTGGATGAATTTGTTCGTATCAAAACTGGGTTGCAGATTATCATTCAAGCTGGCCTGCTCAGAAAGGGTTTATGTTCGGTTCAGGATGAGAGTGCAGGTCTTATAGTTTCTGTTGTGGATCCTCAGCCTGGCGAAATCATAATTGATTGTTGTGCTGCTCCTGGTGGAAAGACCCTGTACATAGCCTCTCGTTTAAGTGGCCAAGGTAAGGTATTTGCAGTTGATGTAAATCGCGGTAGATTGAGAATTCTTAAAGAGACAGCAAAACTACATCAAGTTGATGATGTCGTTACCACCATCCATTCTGATCTTCGCACATTACctGATAGCAAACCACTTAAGTGCAATAAAGTTTTGCTGGATGCTCCATGCTCTGGACTTGGTGTTCTTTCCAAGAGAGCGGACTTGCGTTGGAACAGGAGGCTGGAGGATATGGAAGAGCTAAAGAAATTACAGGATGAGCTCTTGGACGCAGCATCCAAATTGGTAAACCCTGGTGGAGTGTTAGTTTACAGTACATGCTCCATAGACCCTGAAGAGAATGATGAGAGGGTGGCTGCATTTCTAGAAAGACATCCAGATTTCCACATTGATTCTGTAGACAGATACGTTCCAGTTGATTTTGTGACAGACCGTGGCTTCTACTTCTCCAACCCGGTAAAACATTCACTGGATGGCTCCTTTGCAGCTCGGTTGATACGAGATTCATAA 1590 0.4258 MAQLFHLGLPFSVESHKISASSSKSLKLVPTISASNISFSTTRKGSANRLPKTQKLNLEVSPHRAVSAVRLMRIELGGAFADLLNEKGKGSGENEMAYVERTLGFRTRELNDQDLRLVTDIVGGTIRWRRYLDHLISSISHDKDISSMEPLLLQKVAKIGFYEIVKLDMPHYAVVDENVRLAKVALRPGAGNMVNGILRKLAVLKENESLPLPKVEGDDRAQARALATLHSHPVWMVRRWTKYLGQEEAIKLMMWNNNEPSFSLRANHARGFSRADLVAQLNELKVPHKLSSHLDEFVRIKTGLQIIIQAGLLRKGLCSVQDESAGLIVSVVDPQPGEIIIDCCAAPGGKTLYIASRLSGQGKVFAVDVNRGRLRILKETAKLHQVDDVVTTIHSDLRTLPDSKPLKCNKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKKLQDELLDAASKLVNPGGVLVYSTCSIDPEENDERVAAFLERHPDFHIDSVDRYVPVDFVTDRGFYFSNPVKHSLDGSFAARLIRDS 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2040 529 CDD AdoMet_MTases 340 465 - -
Sto9g2040 529 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 252 528 IPR001678 GO:0008168
Sto9g2040 529 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 32 528 IPR023267 GO:0001510
Sto9g2040 529 Gene3D Vaccinia Virus protein VP39 327 529 IPR029063 -
Sto9g2040 529 Pfam NusB family 92 202 IPR006027 GO:0003723|GO:0006355
Sto9g2040 529 TIGRFAM rsmB: 16S rRNA (cytosine(967)-C(5))-methyltransferase 105 527 IPR004573 GO:0006364|GO:0008649
Sto9g2040 529 Gene3D - 86 217 IPR035926 -
Sto9g2040 529 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 224 527 IPR029063 -
Sto9g2040 529 SUPERFAMILY NusB-like 98 236 IPR035926 -
Sto9g2040 529 Pfam 16S rRNA methyltransferase RsmB/F 331 525 IPR001678 GO:0008168
Sto9g2040 529 PANTHER NOL1/NOP2/SUN FAMILY PROTEIN / ANTITERMINATION NUSB DOMAIN-CONTAINING PROTEIN 32 528 - -
Sto9g2040 529 Gene3D Sun protein; domain 3 220 325 - -
Sto9g2040 529 PRINTS Viridiplantae FMU-related RCMT signature 69 92 IPR023268 -
Sto9g2040 529 PRINTS Viridiplantae FMU-related RCMT signature 93 109 IPR023268 -
Sto9g2040 529 PRINTS Viridiplantae FMU-related RCMT signature 209 222 IPR023268 -
Sto9g2040 529 PRINTS Viridiplantae FMU-related RCMT signature 486 498 IPR023268 -
Sto9g2040 529 PRINTS RNA (C5-cytosine) methyltransferase signature 312 326 IPR023267 GO:0001510
Sto9g2040 529 PRINTS RNA (C5-cytosine) methyltransferase signature 341 351 IPR023267 GO:0001510
Sto9g2040 529 PRINTS RNA (C5-cytosine) methyltransferase signature 409 421 IPR023267 GO:0001510
Sto9g2040 529 PRINTS RNA (C5-cytosine) methyltransferase signature 459 475 IPR023267 GO:0001510
Sto9g2040 529 PRINTS RNA (C5-cytosine) methyltransferase signature 510 527 IPR023267 GO:0001510
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2040 Sto-Chr9 24377032 24383297 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2040 K03500 - gmx:100779327 846.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g2040 9 24377032 24383297 Sto9g2040 9 24377032 24383297 ECH