Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2026 ATGGATGAAGGTGAGGGAGGGTTCGGTGAGAGTGGGGATCCGATGGATCAGTTCCATCGCAACGAAGCAATATCAGCTGTAGCCGATGACGGCTTCTTGGCTGAGGAAGACGATGATTACGAGGACCTCTACAACGATGTTAATGTCGGGGAAGGGTTTCTCCAGTCTTTGAGGAAGAACGAGGATTCCGGGTTTCGGAATGAGGAGGTTGAGGAGAAAAAGGCGCAATCGACAGCGGTGCCACCGGCAGCTGGTGGTGTTTCAATTCCAGCTGCTGGAGGTGGAGGTACGGTTTTGGATGCTGCATCCATGGCTCCAGGGAGAACAGATGGGATTCAAAATCAGGGATTTAGAGGGAATGAGATGGGTGTGAAAGGTGGAATGAGGGTTGAATTAGGCAAACCACCGGGTAAGCTGAATGAGATAGAGGAGCAGAGTGCTAATAATAATGTGGGAGTACAAGGGATGGGGCAGCAACCTCATGGTGGAGTTTCTGGGAATGTGGGCAATGAAAGTATGGTGAGACAAGCTGGAGGAGGAGGAAATCTCAATAGGGTTGGTGGCAATGGTGTTGCAAATAGTGTGAGTGCTGTAAATGTAGTTAATACTGGAGGAGGACCTACTGTTGTGGGCGGTGGCAGTGCTggaagtggtggtggtgggggcACCATATTATTTGTGGGTGATTTGCACTGGTGGACTACAGATGCTGAGTTGGAGGCTGAGCTTTGCAAGTATGGGCCAGTGAAGGAGGTCAAATTTTTTGACGAGAAGGCTAGTGGGAAGTCGAAAGGGTATTGTCAGGTTGAGTTTTATGACCCTTCTGCTGCATCTGCTTGTAAGGAAGGTATGGATGGGCATATGTTTAATGGGCGGCCATGTATTGTTGCTTTTGCATCACCTTTCACAGTTAAGAGAATGGGAGAAGCCCAGGTAAATAGGAATCAACAGATGGCCCAATCTACAACTACTCAGGCAAGGAGAGGGCCTGCTGATCCTGGTGCTAAAATGGGTGGGAGTAACATTACTACTGGTGGAAATTACCAAGGTGGAGATGGCAACCGAGGCTATGGGAGGGGTAACTGGGGAAGAGGGAATAATCCTGGGATGGGAAATAGGGGCCCTGTTAATCCAATGAGGAATAGGGGTGGTGGGATGGGTGGTAGAGGCATAATGGGTAATGGTGGGAATGGATTTGGACAGGGAATTGGTGCTACCCCTCCTCTGTTACATCCTCAGTCAATGATGAATCAAGGTTTTGATCCTGCATTTGGTGCTCCTATGGGTAGAATGGGTGGCTATGGAGGCTTTCCAGGTGCTCCAACACCTCCATTCTCTGGGATCTTGCCTTCATTTCCTGCTGTTGGAGGTGTTGGTTTGCCTGGAGTTGCACCTCATGTTAATCCAGCATTTTTTGGAAGAGGAATGCCTATGAATGGTATGGGGATGATGCCCACATCTGGAGTTGATGGTCCTAATATGGGAATGTGGTCAGATCCAAGTATGGGTGGATGGGGTGATCAACAGGGTGGTGGAAGAGCTGGAGAATCAAGTTATGGGGAGGAAGCTGCATCAGACCATCAGTATGGTGAGGCGAGTCATGATAGAGGTGGTTGGCCTAATGCCATGAGAGAAAAAGATAGAGGATCAGAAAGGGACTGGTCAGGTTCTTCTGAGCGAAGGTACAGGGATGATAGAGATCAAGGATATGAGAGAGATGCTCCTAGAGAAAAGGATGCTGGCCAGGAACATGAATGGTCTGAAAGAAGACATCGTGATGATAGAGAAATAGGTCGGGAACGGTCTCGAGACCGTGAACGTGAACGGTCTAGGGACCGTGATCGTGATCGAGAAAGGGATCGCGATAGAGATCGTGAGCGTGACAGGTACAAGGAAGACAGGGACAGATATGCAGACCATCATAGGTACCGAGACCGTGAAGCTGACCATGAAGATGAGTGGGAACGGGGAAGGTCATCAAGGACCCACAGCAAGTCACGATTACCGCAGGAGGAGGAACATCATTCAAGATCTAGAGATGCTGATTATGGCAAGAGGAGACGACTTACCTCTGAGTAA 2079 0.4868 MDEGEGGFGESGDPMDQFHRNEAISAVADDGFLAEEDDDYEDLYNDVNVGEGFLQSLRKNEDSGFRNEEVEEKKAQSTAVPPAAGGVSIPAAGGGGTVLDAASMAPGRTDGIQNQGFRGNEMGVKGGMRVELGKPPGKLNEIEEQSANNNVGVQGMGQQPHGGVSGNVGNESMVRQAGGGGNLNRVGGNGVANSVSAVNVVNTGGGPTVVGGGSAGSGGGGGTILFVGDLHWWTTDAELEAELCKYGPVKEVKFFDEKASGKSKGYCQVEFYDPSAASACKEGMDGHMFNGRPCIVAFASPFTVKRMGEAQVNRNQQMAQSTTTQARRGPADPGAKMGGSNITTGGNYQGGDGNRGYGRGNWGRGNNPGMGNRGPVNPMRNRGGGMGGRGIMGNGGNGFGQGIGATPPLLHPQSMMNQGFDPAFGAPMGRMGGYGGFPGAPTPPFSGILPSFPAVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGDQQGGGRAGESSYGEEAASDHQYGEASHDRGGWPNAMREKDRGSERDWSGSSERRYRDDRDQGYERDAPREKDAGQEHEWSERRHRDDREIGRERSRDRERERSRDRDRDRERDRDRDRERDRYKEDRDRYADHHRYRDREADHEDEWERGRSSRTHSKSRLPQEEEHHSRSRDADYGKRRRLTSE 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2026 692 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 6-LIKE 1 691 - -
Sto9g2026 692 Gene3D - 219 332 IPR012677 -
Sto9g2026 692 MobiDBLite consensus disorder prediction 61 75 - -
Sto9g2026 692 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 225 293 IPR000504 GO:0003723
Sto9g2026 692 SUPERFAMILY RNA-binding domain, RBD 221 309 IPR035979 GO:0003676
Sto9g2026 692 MobiDBLite consensus disorder prediction 489 692 - -
Sto9g2026 692 SMART rrm1_1 224 297 IPR000504 GO:0003723
Sto9g2026 692 MobiDBLite consensus disorder prediction 1 23 - -
Sto9g2026 692 MobiDBLite consensus disorder prediction 527 692 - -
Sto9g2026 692 MobiDBLite consensus disorder prediction 315 375 - -
Sto9g2026 692 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 223 301 IPR000504 GO:0003723
Sto9g2026 692 MobiDBLite consensus disorder prediction 57 88 - -
Sto9g2026 692 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFIC FACTOR 1 691 IPR034772 -
Sto9g2026 692 CDD RRM_CFIm68_CFIm59 225 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2026 Sto-Chr9 24203208 24205367 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2026 K14398 - gmx:100813748 839.721
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g2026 9 24203208 24205367 Sto9g2026 9 24203208 24205367 ECH