Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g4144 ATGTGGCCGTTCAGCAGAAAAGGGCCTTCAGGGTTTTCGTCGTCTTCCACGGCTGAGGAAGTTACTGAAGGGATCGATGGGAATGGCCTCACTGCAATTGTCACAGGAGCATCCAGTGGTATTGGAACTGAGACTACACGTGTTCTTGCTTTGCGTGGTGTCCATGTGATTATGGCTGTGAGGAATATGATTTCTGCTAAAGATGTCAAAGAAGCAATAATTAAGGAGATACCCACAGCTAAAGTTGATGCCATGGAGTTAGACCTTAGTTCAATGGCATCAGTCCGGAAATTTGCAGCAGAGTTCAATTCCTCTGGTCTTCCATTGAACATCCTGATAAACAATGCAGGGATTATGGCAACCCCCTTCATGCTGTCTAAAGACAATATTGAATTGCAGTTTGCCACAAATCACTTAGGTCATTTTCTTTTGACACATCTTTTGCTGGATACAATGAAGAAAACTGCAAGAAAAAGTAAGAGAGAAGGAAGAATTGTTAATCTCTCCTCAGAGGCTCACCGATTTACATACCGTGAAGGAATTCGTTTTGATAAAATCAATGATCAGTCAggTTACAAAAGCTGGGGTGCATATGGGCAATCAAAGCTTGCAAACATTTTACATGCCAACGAACTTGCAAGACATTTCAAGGAAGATGGGGTAGATATTATTGCAAATTCTCTTCACCCAGGAACAATTGTCACTAATCTTTTCCgtcataataatttaattaatggtaagTGCCACATTATcaatGCAGGTATGGTTAATGTGCTTGGGAAATTTGTATTTAAGAATGTTAAGCAGGGAGCAGCAACAACATGTTATGTGGCTTTGCACCCACAAGTGAAGGGAGTCAGTGGCGAGTACTTCTCAGATAGTAATGTTGCCAATCGAACCTCACATGCCAAGGACGTGCAGTTGGCAAAGAAACTCTGGGATTTCAGcataaatatgataaaatag 966 0.4006 MWPFSRKGPSGFSSSSTAEEVTEGIDGNGLTAIVTGASSGIGTETTRVLALRGVHVIMAVRNMISAKDVKEAIIKEIPTAKVDAMELDLSSMASVRKFAAEFNSSGLPLNILINNAGIMATPFMLSKDNIELQFATNHLGHFLLTHLLLDTMKKTARKSKREGRIVNLSSEAHRFTYREGIRFDKINDQSGYKSWGAYGQSKLANILHANELARHFKEDGVDIIANSLHPGTIVTNLFRHNNLINGKCHIINAGMVNVLGKFVFKNVKQGAATTCYVALHPQVKGVSGEYFSDSNVANRTSHAKDVQLAKKLWDFSINMIK 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g4144 321 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 2 321 - -
Sto8g4144 321 MobiDBLite consensus disorder prediction 1 20 - -
Sto8g4144 321 Gene3D - 24 321 - -
Sto8g4144 321 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 107 118 IPR002347 -
Sto8g4144 321 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 163 171 IPR002347 -
Sto8g4144 321 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 198 217 IPR002347 -
Sto8g4144 321 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 29 297 IPR036291 -
Sto8g4144 321 CDD retinol-DH_like_SDR_c_like 29 313 - -
Sto8g4144 321 PRINTS Glucose/ribitol dehydrogenase family signature 31 48 IPR002347 -
Sto8g4144 321 PRINTS Glucose/ribitol dehydrogenase family signature 107 118 IPR002347 -
Sto8g4144 321 PRINTS Glucose/ribitol dehydrogenase family signature 157 173 IPR002347 -
Sto8g4144 321 PRINTS Glucose/ribitol dehydrogenase family signature 221 238 IPR002347 -
Sto8g4144 321 Pfam short chain dehydrogenase 31 175 IPR002347 -
Sto8g4144 321 PANTHER RETINOL DEHYDROGENASE 2 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g4144 Sto-Chr8 44151964 44164029 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g4144 33 183 Acyl Lipid Metabolism Gene Families AT1G62610 33.333 5.76e-12 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g4144 - - rcu:8280994 483.796
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g4144 8 44151964 44164029 Sto8g4144 8 44151964 44164029 ECH