Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g3578 ATGGAACCCATCGGCGTTTTCATGCCCCAACCAACGTTCCCTTACTTAGAGAACAAGCTCGAAAGACGCTTTAAGCTCTTCCACTTCTGGAACGATCCGGAAAAGTTCCAGATTACCACCAGCGACCACCACGCCCTCGCCAGCTCCGTTCGCGCCGTCGTGGTGAACTCCGTCGACGGGGCAGATGCCGATCTGATAGAAACGTTTCCGAAGCTCGAGATCGTGTCGTGCTATGGTGTGGGCGTGGATAAGATCGACTTGAACAAGTGCGCAGAGAAGGGAGTTCGAGTAACGAACACTCCCGATGCGATAACCGATGAGGTCGCCGACTTGGCCATCGGATTGATCTTGGCTCTCTTGAGGAGGCTGTGTGCGtgtgatgataatgatgttgggGAAGCATTGGAGGTTCATGATGGCGCAAGCAAAGGAAAATATACTATTGGGCTTGGACAAGAGTGCATGGCATTTTGCACAGAGGTGGAAGATGTTATCTCAATGAGCTTGACAGTCGTTACTTCACTTCttgaaaaattcaaaattgatcCGAAGCAAATTGGACGCTTGGAAGTTGGCAGTGAGACTGTAATTGACAAAAGCAAATCCATTAAGACCTTCCTAATGCAAGTTTTTGAgGAGAGCGGTAATACGGACATTGAAGGTGTTGATTCAACAAATGCATGCTATGGTGGAACAGcagctttgttcaattgtgtgAATTGGGTGGAAAGTACATCATGGGATGGGCGCTATGGACTTGTTGTTTGTACAGACAGTGCGGTTTATGCAGAAGGACCAGCCCGTCCCACTGGTGGAGCAGCTGCAATTGCCATCCTTATAGGGCCAGATGCTCCAATTGCTTTTGAAAGCAAATTCAGAGGCAGTTATATGTCTCATGCCTATGATTTTTACAAGCCAAACCTTGCAAGTGAATACCCAGTTGTGGATGGAAAGCTCTCACAGACATGTTATCTCATGGCACTTGATTCCTGCTACAAGCATTTTTGTGAGAAATTTGAAAAATTGGAGGGGCGGCCATTTTCAATCTCAGATTCTGATTATTTTGTGTTTCATTCTCCATATAACAAGCTTGTACAAAAAAGTTTTGGTCGGCTGTACTTCAATGACTTCCTGAGAAATTCCAGTTTTGTTGATGAAGCTGCCAGAGAAACCCTAGAACCATTCAAATCTTTATCCGGTGAAGAGAGCTATCAGAGCCGTGAACTTGAAAAGGCAAACCAGCAAGCTGCAAAGCATTTATATGATGAGAAAGTGCAACTCACCACATTAATCCCAAAACAAGTTGGTAATATGTACACTGCATCTCTTTATGCAGCATTTGCATCTCTCCTTCACAATAAGCATAGCTCACTGTCAGGCAAGAGGGTAGTTATGTTTTCATATGGAAGTGGTTTAACAGCTACATTGTTCTCATTCCGTATTCAAGAAGGTCATCATCCTTTTAGTATTTCAAACATAGCAACAGTGATGAATGTTTCTGGTAAATTGAATCAGAGACTTGAGATTCCTCCAGAAAAATTCGTTGAAAACCTGAAGCTCATGGAGCATCGTTATGGGGCAAAGGATTTTGTGACGAGCAAGGACACCAGCTGCTTACCCCTTGGCGCCTACTATCTCACTGAAGTCGATTCCATGTATAGGCGATTCTATGCCAAGAAATCAGACGACACATCATCACATAAAGACTCCAATGGTTGCATCTAA 1725 0.4313 MEPIGVFMPQPTFPYLENKLERRFKLFHFWNDPEKFQITTSDHHALASSVRAVVVNSVDGADADLIETFPKLEIVSCYGVGVDKIDLNKCAEKGVRVTNTPDAITDEVADLAIGLILALLRRLCACDDNDVGEALEVHDGASKGKYTIGLGQECMAFCTEVEDVISMSLTVVTSLLEKFKIDPKQIGRLEVGSETVIDKSKSIKTFLMQVFEESGNTDIEGVDSTNACYGGTAALFNCVNWVESTSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAILIGPDAPIAFESKFRGSYMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKHFCEKFEKLEGRPFSISDSDYFVFHSPYNKLVQKSFGRLYFNDFLRNSSFVDEAARETLEPFKSLSGEESYQSRELEKANQQAAKHLYDEKVQLTTLIPKQVGNMYTASLYAAFASLLHNKHSSLSGKRVVMFSYGSGLTATLFSFRIQEGHHPFSISNIATVMNVSGKLNQRLEIPPEKFVENLKLMEHRYGAKDFVTSKDTSCLPLGAYYLTEVDSMYRRFYAKKSDDTSSHKDSNGCI 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g3578 574 Pfam Hydroxymethylglutaryl-coenzyme A synthase N terminal 134 285 IPR013528 -
Sto8g3578 574 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 30 377 IPR006139 GO:0016616|GO:0051287
Sto8g3578 574 ProSitePatterns Hydroxymethylglutaryl-coenzyme A synthase active site. 216 231 IPR000590 GO:0004421|GO:0008299
Sto8g3578 574 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A SYNTHASE 133 560 - -
Sto8g3578 574 SUPERFAMILY Formate/glycerate dehydrogenase catalytic domain-like 6 127 - -
Sto8g3578 574 Gene3D - 15 104 - -
Sto8g3578 574 TIGRFAM HMG-CoA-S_euk: hydroxymethylglutaryl-CoA synthase 133 560 IPR010122 GO:0004421|GO:0008299
Sto8g3578 574 SUPERFAMILY Thiolase-like 286 558 IPR016039 GO:0016746
Sto8g3578 574 SUPERFAMILY Thiolase-like 135 283 IPR016039 GO:0016746
Sto8g3578 574 Pfam Hydroxymethylglutaryl-coenzyme A synthase C terminal 286 560 IPR013746 GO:0004421|GO:0006084|GO:0010142
Sto8g3578 574 Gene3D - 105 128 - -
Sto8g3578 574 CDD init_cond_enzymes 133 479 - -
Sto8g3578 574 Gene3D - 136 562 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g3578 Sto-Chr8 32977548 32988284 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g3578 K01641 - gmx:100794889 756.133
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g3578 8 32977548 32988284 Sto8g3578 8 32977548 32988284 ECH