Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g2213 ATGCCCTACTCTGCCATTTTTCATGGCTTTCACAGAGCCACTTCTTCTGCTGCAACCCTTTTTCTCACTATGTCTCTCAGGGGTTCCCCTTTCGTTTCATCCCACGTAACTCTCAGAGCTCGGagaccttcttcttctcttctctccaCTTCCTTGAGACGTCAACCACTTGGGTCAAGGAGTTTTCATGTTCGCCCAAAGATAAGGTCTCAGCTTGGGGTTGTGTGCTCTGTCGCGCCTTCTAGGATCACTGAGGTGGATTCGAATGAGAGgaagggtgtggggtttaggcgGAAGAGCATTGGTTTGCCATTTTGGCATCAGCAAAGCTCAAATTATGGTCGTTTTGCTTACCAGGATGAGTCTAGTGATGAATCCGATGTGGAATTGGGGTCCTCTCAGCAGCAATTGAATGGGCTACCTGTTAACCATCAACTGTGGCCTGTGGGCTATCTGCTATTGGTGAGAGATGTGGGTAGTAAACAAGTAGTCTTAGGTTCAAACTGTTGCTCCATCATGtttctgaaagaaaagaagactgGGCTGACTGGTGGTTCATCCCTTGAGAATATTGATGAGTGGAGATGGAAGCTGACCATGCTTCTTCGCAACAAAGATGAGCAGGAAGTGGTGTCAAGGGAGAAAAAGGACAGACGTGATTTTGACCATCTTTCAGCTTTGGCAACTAGGATGGGTCTATATAGCCGACAATATTCAAAAGTAGTTGTCTTTAGCAAAGAACCTCTGCCAAATTACAGATCTGATCTGGATGACAAGCGTCCGCAGAGGGAGGTTATCTTACCTTTTGGTGTTCATAGAGAAGTAGATTCTCATCTCATTGCTCATCTTTCTAAAAAGTCTACAAGTTTGGGAGGTTTTTCGGATAAATCCTTGCATAGGTCAAGCAGTGCTAGCATTCTTGTGGATGATGGAGTTTTTGAGGAGCCACAGCCCTTGGTGCAGAATAGTGTTGTTGCGGAGAAAATCCATCGACGAAAAAGTTTGCAACTGCGTAATCAACAACAAGATTGGCAGGAGTCTCCTGAAGGGCAAAAGATGCTTGAATTTCGTAGAAGTCTTCCTTCTTTCAAAGCCAAGGATGCATTATTGAAAGCCATTTCAGAGAATCAGGTTGTTGTGGTCTCAGGTGAAACTGGTTGTGGTAAGACCACACAACTTCCTCAATATATATTAGAGTCCGAGATTGAAGCTGCACGCGGAGCTGTCTGTAGCATAATTTGTACTCAGCCTAGGAGAATATCAGCAATGTCTGTTTCTGAAAGAGTTGCAGCAGAACGTGGGGAGAAATTGGGAGAATCCGTTGGTTACAAGGTTCGGCTGGAGGGTATGAGAGGAAGAGACACCCGTCTCCTTTTTTGCACTACAGGTGTATTGTTGCGGAGACTACTTGTGGATAGATATCTAAAAGGTGTAAGTCATGTCATTGTTGATGAAATTCATGAACGTGGAATGAATGAAGATTTTCTTCTGGTAGTTTTGAAGGATCTCCTTCCACGTCGTCCAGACCTTAGGTTAATTTTGATGAGTGCAACCTTAAACGCTGAGCTTTTTTCTTCCTACTTTGGTGGCGCTCCAACCATGCATATTCCTGGTTTCACATATCCAGTTCGAGCACATTTTTTGGAGGATATTCTGGAAATGACCGGATATCGGTTGACTTCTCACAATCAAATTGATGACTATGGTCAAGAGAAGACATGGAAAATGCAGAAACAAGTTCAagctttcaaaaaaagaaagaccCAGATTGCTTCTGCTGTTGAGGATGCGCTGGAAGCTGCAGACTTCAAGGGGTATAGCTTACGCACCCGGGAGTCATTATACTGCTGGAGTCCTGATTCAATTGGTTTTAATCTTATTGAACATGTGCTTTGCCACATTGTCAAGAGAGAAAGGCCAGGGGCTGTTTTGGTTTTTATGACTGGTTGGGATGACATAAACTCTTTAAAGGATCAGCTCCAAGCTAATCCTCTGTTGGGTGATCCCAGCAAAGTATTGCTTCTTGCATGCCATGGCTCCATGGCTAGCTCTGAGCAGAGGTTAATATTTGAAAATCCTGAAGGAGGAGTGAGGAAAATAGTTCTTGCCACTAATATGGCTGAGACTAGTATTACCATCAATGATGTTGTCTTTGTGATTGATTGTGGAAAAGCAAAAGAGACATCTTATGATGCACTAAATAACACTCCTTGTCTGCTTCCATCTTGGATCTCAAAGGCTGCTGCTCGGCAGAGAAGAGGAAGGGCAGGTCGTGTTCAACCTGGCGAATGTTACCATCTTTATCCTAGATGTGTTTATGATGCGTTTGCTGATTATCAATTGCCAGAGCTTTTAAGAACACCTTTACAGTCCTTATGTCTTCAGATCAAAAGTCTAAATCTTGGAAGTATTTCAGAATTCCTATCCAGAGCTCTGCAACCACCTGAGCCTCTATcgGTTCAAAATGCTGTTGAATATTTGAAGATTATTGGGGCTTTGGACGAGGATGAAAATCTGACAATTCTAGGTCGTAATTTATCAATGCTTCCTGTAGAGCCCAAACTTGGCAAGATGCTTATTTTAGGAGCTATCTTCAATTGTTTAGATCCGGTAATGACTGTTGCCGCTGGTCTGAGTGTAAGAGATCCGTTCTTGATGCCGTTTGACAAGAAGGATCTTGCAGAGTCTGCCAAGGCCCAGTTTGCAGCTCGTGACTATAGTGATCATCTTGCTCTTGTCCGGGCTTATGAGGGTTGGAAAGATGCAGAATCACAGAAAGCTGGTTATGAGTACTGTTGGAgaaattttctttcttcacaAACACTTAGGGCCATTGACTCTCTCCGAAAGCAATTTTTTTACCTGCTTAAAGATATTGGTTTGGTTGATCATAATGCTGAAAACTGCAACACATGGAGTCATGATGGGTATCTGGTTCGAGCAGTCATCTGTGCAGGTTTATTTCCCGGAATATGCTCTGTCGTGAACAAAGAAAAGTCaatagcactgaaaacaatGGAGGATGGTCAGGTTCTTCTGTATGCTAACTCTGTAAATGCTGTCGTACCCAAAATCCCATTCCCATGGCTGGTATTTAATGAAAAGGTGAAGGTGAATTCAGTCTTCCTCCGGGATTCAACTGGTATATCAGATTCAATGCTGCTCTTATTTGGTGGCAATGTGTCCAGAGGTGGACTAGATGGTCACCTGAAAATGTTGGGAGGGTATTTGGAATTTTTCATGAAGCCCGAATTAGCCAAGACTTACTTAAACCTGAAGAAGGAGCTGGATGaattaatacataaaaaaCTTCTGGATCCCAAGTTGGATATACGATCACATATCGAGCTTCTTTCAGCTGTAAGATTGTTGGTGTCAGAGGACCAGTGTGATGGCAGATTCGTCTACGGTCGTGTGCCATCACCACCATCAAAGAAGGCAACAAAAGTCGACAAAAGTGGTGCTGATGTTGAGAGTGGTAATTATAAAAACCAGCTTCAAACATTACTTACCAGGGCTGGACATGAACCACCAACCTACAAAACAAAACCACTGAAAAACAACCAATTCCGCTCCACGGTCATCTTCAATGGCTTGAATTTTGTCGGTAAGCCTTGCAACAGCAAGAAACTAGCAGAAAAGGACGCTGCGGCTGAGGCGATCCTGTGGTTAAAGGGAGATACTGAATCATCTCGTGAAAATTTAGATTATGTGTCCGTGCTTCTAAAAAaggacaagaaaaaaaataagaaaacttcAATTAGTGGTGCTGAAAGGGAGCTGCATGACCGTCACTCCAAAAGATCAAGATCTTGGTTTAGATAA 3825 0.4159 MPYSAIFHGFHRATSSAATLFLTMSLRGSPFVSSHVTLRARRPSSSLLSTSLRRQPLGSRSFHVRPKIRSQLGVVCSVAPSRITEVDSNERKGVGFRRKSIGLPFWHQQSSNYGRFAYQDESSDESDVELGSSQQQLNGLPVNHQLWPVGYLLLVRDVGSKQVVLGSNCCSIMFLKEKKTGLTGGSSLENIDEWRWKLTMLLRNKDEQEVVSREKKDRRDFDHLSALATRMGLYSRQYSKVVVFSKEPLPNYRSDLDDKRPQREVILPFGVHREVDSHLIAHLSKKSTSLGGFSDKSLHRSSSASILVDDGVFEEPQPLVQNSVVAEKIHRRKSLQLRNQQQDWQESPEGQKMLEFRRSLPSFKAKDALLKAISENQVVVVSGETGCGKTTQLPQYILESEIEAARGAVCSIICTQPRRISAMSVSERVAAERGEKLGESVGYKVRLEGMRGRDTRLLFCTTGVLLRRLLVDRYLKGVSHVIVDEIHERGMNEDFLLVVLKDLLPRRPDLRLILMSATLNAELFSSYFGGAPTMHIPGFTYPVRAHFLEDILEMTGYRLTSHNQIDDYGQEKTWKMQKQVQAFKKRKTQIASAVEDALEAADFKGYSLRTRESLYCWSPDSIGFNLIEHVLCHIVKRERPGAVLVFMTGWDDINSLKDQLQANPLLGDPSKVLLLACHGSMASSEQRLIFENPEGGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHLYPRCVYDAFADYQLPELLRTPLQSLCLQIKSLNLGSISEFLSRALQPPEPLSVQNAVEYLKIIGALDEDENLTILGRNLSMLPVEPKLGKMLILGAIFNCLDPVMTVAAGLSVRDPFLMPFDKKDLAESAKAQFAARDYSDHLALVRAYEGWKDAESQKAGYEYCWRNFLSSQTLRAIDSLRKQFFYLLKDIGLVDHNAENCNTWSHDGYLVRAVICAGLFPGICSVVNKEKSIALKTMEDGQVLLYANSVNAVVPKIPFPWLVFNEKVKVNSVFLRDSTGISDSMLLLFGGNVSRGGLDGHLKMLGGYLEFFMKPELAKTYLNLKKELDELIHKKLLDPKLDIRSHIELLSAVRLLVSEDQCDGRFVYGRVPSPPSKKATKVDKSGADVESGNYKNQLQTLLTRAGHEPPTYKTKPLKNNQFRSTVIFNGLNFVGKPCNSKKLAEKDAAAEAILWLKGDTESSRENLDYVSVLLKKDKKKNKKTSISGAERELHDRHSKRSRSWFR 1274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g2213 1274 Pfam Helicase associated domain (HA2) 823 909 IPR007502 GO:0004386
Sto8g2213 1274 SMART DRBM_3 1162 1225 IPR014720 -
Sto8g2213 1274 CDD SF2_C_RHA 617 768 - -
Sto8g2213 1274 Pfam Helicase conserved C-terminal domain 628 759 IPR001650 -
Sto8g2213 1274 SMART ultradead3 349 551 IPR014001 -
Sto8g2213 1274 Gene3D - 314 538 IPR027417 -
Sto8g2213 1274 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 362 939 IPR027417 -
Sto8g2213 1274 SMART ha2_5 822 913 IPR007502 GO:0004386
Sto8g2213 1274 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 370 537 IPR014001 -
Sto8g2213 1274 Gene3D - 802 906 - -
Sto8g2213 1274 Gene3D - 1144 1229 - -
Sto8g2213 1274 SUPERFAMILY dsRNA-binding domain-like 1156 1225 - -
Sto8g2213 1274 Pfam DEAD/DEAH box helicase 368 521 IPR011545 GO:0003676|GO:0005524
Sto8g2213 1274 MobiDBLite consensus disorder prediction 1245 1274 - -
Sto8g2213 1274 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 479 488 IPR002464 -
Sto8g2213 1274 Gene3D - 614 778 IPR027417 -
Sto8g2213 1274 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH5, MITOCHONDRIAL 182 1169 - -
Sto8g2213 1274 PANTHER ATP-DEPENDENT RNA HELICASE 182 1169 - -
Sto8g2213 1274 SMART helicmild6 654 760 IPR001650 -
Sto8g2213 1274 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 979 1061 IPR011709 -
Sto8g2213 1274 MobiDBLite consensus disorder prediction 1251 1267 - -
Sto8g2213 1274 CDD DEXHc_RHA-like 376 536 - -
Sto8g2213 1274 Pfam Double-stranded RNA binding motif 1162 1224 IPR014720 -
Sto8g2213 1274 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 626 800 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g2213 Sto-Chr8 14642442 14653511 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g2213 K14442 - qsu:112030200 1808.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g2213 8 14642442 14653511 Sto8g2213 8 14642442 14653511 ECH