Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g2170 ATGAAGTCTTCTTCTGATACAATCAACATCGCTGCCGTTTCTCAGAGACTTGATGTCGATAATCGGATTTCTATCCGTTACTACTATCGGATCGCTGATAATATCCTCAAGCAGGCTGATATCTTTCGGGCAGAGAAGAATATCATCGATCTATATGTTATGCTTCTAAGATTTTCCAGtttGGTGTCTGAGACAATACCATGCCATCGAGATTATAAAGCATCTCCACAAAGCAAAAAAGTTGCTTTGAAAAAGAAATTGTTAAATTCTTTGAATGAACTAGAGGAGTTGAAACCATTGGTGCAACAAAAGATCATTGAACTTAACAGAAGACAAACCTACCAGCAAAATCGGTGGGGAAAATCACATTCAAataatttgattcaattttctCCAGTTAAAAAGCAAACTAATACCAGCAGTGGTCAAATTaaggtaatattttttttgCAGGCAGAGAGACCAATTTCTGGTGATTTTTCATACCGAGGATCAAGGGGTCAACAATTTTCTTATGTTAGGCCGGTGCAAGAGCATTTCCACAGGCTATCTCTAACTCTGCCACGTCCAAAGGAGGAAACTCTGTCTAGACATTCCATTCTAGGTCCCAATGGGCTTAAAGGGCAGTGGCAGCCACCTACAAGTGATAAAGGGATCAGGTATCCAACCAACATAGACCTGTCTCCAGTTGAAATACCAagCCTGCAACAGTCCTTGGATGATGGATCACTGGATAAAAAAGATAATAGCATCTTGGACCACAGTAGATCAGATGTAGAATCAATTATTCCTGAGAGTGAGGATTGCAAAGCCCAACATGCAGAGGAACCTATTTCTCTTATCTCTTTTGAAACAACAGAAGTTCCTGTTCAAACAGATATAATCAGACAGCCTTCTCCCCCACCTGTGCTTGCTGAAGTACAAGATTTAATCCCTGCGGTGTCACCGCATGTTGCAGAGGCAGAATGTAAGATAGAGACTCCCTCATCAGATGAGTTAGTTCATGGTGAAACTCCTCTGCAACTTCACATTTCAACTACTTTGATGGAGAATTTTATGAAGCTTGCCAAGTCAAATACCGACAAAAATTTAGAAACTTGTGGTATACTGGCAGGTTTGCTTAAGAACAGAAAATTTTACATTACGACCCTTATAATCCCAAAGCAGGAGTCAACATCAGATACTTGTCAGACCACAAATGAAGAGGAAATATTTGAAGTGCAGGATAAGCTATCTCTTTTCCCCCTTGGGTGGATTCATACACATCCTACGCAATCTTGCTTCATGTCATCCGTTGATCTGCATACCCATTACTCATATCAGATCATGCTGCCAGAATCTGTAGCTATAGTCATGGCACCTAGAGATAGTTCGAGAAAACATGGGATCTTTCGTTTGACAGCTCCTGGTGGGATGTCGGTCATAAGACAATGCCAGCAACGTGGGTTTCATCACCACAGTCAGCCTCCAGATGGTGGTCCACTTTACAACACCTGTACAGATGTTTATATCAATCCAGATTTAAATTTTGATGTCATTGATCTTCGATGA 1551 0.401 MKSSSDTINIAAVSQRLDVDNRISIRYYYRIADNILKQADIFRAEKNIIDLYVMLLRFSSLVSETIPCHRDYKASPQSKKVALKKKLLNSLNELEELKPLVQQKIIELNRRQTYQQNRWGKSHSNNLIQFSPVKKQTNTSSGQIKVIFFLQAERPISGDFSYRGSRGQQFSYVRPVQEHFHRLSLTLPRPKEETLSRHSILGPNGLKGQWQPPTSDKGIRYPTNIDLSPVEIPSLQQSLDDGSLDKKDNSILDHSRSDVESIIPESEDCKAQHAEEPISLISFETTEVPVQTDIIRQPSPPPVLAEVQDLIPAVSPHVAEAECKIETPSSDELVHGETPLQLHISTTLMENFMKLAKSNTDKNLETCGILAGLLKNRKFYITTLIIPKQESTSDTCQTTNEEEIFEVQDKLSLFPLGWIHTHPTQSCFMSSVDLHTHYSYQIMLPESVAIVMAPRDSSRKHGIFRLTAPGGMSVIRQCQQRGFHHHSQPPDGGPLYNTCTDVYINPDLNFDVIDLR 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g2170 516 Coils Coil 91 111 - -
Sto8g2170 516 PANTHER AMSH-LIKE UBIQUITIN THIOESTERASE 3 516 - -
Sto8g2170 516 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 340 445 IPR000555 GO:0005515|GO:0008233|GO:0008237
Sto8g2170 516 MobiDBLite consensus disorder prediction 191 223 - -
Sto8g2170 516 Gene3D Cytidine Deaminase, domain 2 322 516 - -
Sto8g2170 516 SUPERFAMILY JAB1/MPN domain 341 472 - -
Sto8g2170 516 ProSiteProfiles MPN domain profile. 342 472 IPR037518 -
Sto8g2170 516 PANTHER AMSH-LIKE PROTEASE 3 516 - -
Sto8g2170 516 CDD MPN_AMSH_like 341 516 IPR044098 GO:0016579|GO:0061578|GO:0070536|GO:0140492
Sto8g2170 516 SMART pad1_6 341 469 IPR000555 GO:0005515|GO:0008233|GO:0008237
Sto8g2170 516 Pfam USP8 dimerisation domain 10 99 IPR015063 -
Sto8g2170 516 Gene3D - 1 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g2170 Sto-Chr8 14256366 14262203 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g2170 K11866 - gmx:100800636 786.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g2170 8 14256366 14262203 Sto8g2170 8 14256366 14262203 ECH