Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g1613 ATGGCCATGACTATAGTAAGTGATAGCGGTCCTTCGATTCCAAGTCATCCAGAGCACCGACCTCAAGAGTGTGGTCCTCAGCCTCTTGCAGGTACAAGTGCCTCAAAGCGGAAGAGAAGAATGCTCACAGACACGTGTTTCCGGTGCCGTCAACAGGGTCACTGGGCTCGACATTGCCCTCTCAATTCTCCGACCACCAAATCTCACACACCCGTCGTTGAAGATTCCGGTATTGCCAAAATCCAATGCCGATGCGGTTATGGATTTTGCGAGATTAGAACGGCCACCACCAACCCACTGAACATTGGAAGGAACTACTATGTTTGCCCCATCAAAAGGGGAAAGAAATGTAGTAACTTCGTTAAATGGTGTGATGCTCCAATCAATGAGAGTGATTTGCGTCCTCCACCCTATAAATACCCAGAATGTCGTTGCGGTGCCGGAGTGTGTCGAAAGGAACGAGAGAATACTTTTCCAAATGCTGGTTACTTCACTTGCCCAGTGCCAAAGgACCATGGATCTTGCGGTTTCCACTTATGGGAGAATATGCTACTGGATACAACAAGCGTTGTTCCTGTCCAAAAAAGCAGTCAAGGATCGGTTCATTTTAATTGGGTGGACAACCAAGTTGATGAAACAAATGGACGTGTGTTAAATATTGGAAGTGAGAATTTCAAAAGGATGAGAATCGTGAATGATTCTCAGTGTTCCCCTATCAGTGCTGTATCTGAAGTTCCAGAGGAAGCTTCAGCGGAGAGAGAGGATCATAATGGAGCAGTAGCATTATCAACTTTAAAAGATTCTCATTTTCCAGAATTTGAGTTTGCCGATGATCTCGTGGATCTAGATATGACAAATACAATGTCATGGGATTCTATTGTGGAGGAGGCACGTCTACTATCGACACTGCGCAGATTTCCCTCTCAACAGAGAGAAGTTGAGAGGAAAATTCTTACCATTGGCGATGCACCTTTTGGTAGCATCTCTTGTCTATCTCCTGCTTGTTTTTCCAAATTTCTGAGAAGCCATTTTAGAATATCTATTGACCCAGTTGCAGGTTCTCTTCCAATGGGTTGGTTAGGTCGGCTTGTCTTCTTCACTCCATCTCAAGGACTAAAACTTTCACCACCACAGCCACTTTTCTGTTGTATTTTCCCATCTTTcaatgctattgttgttcctaaacagGAGAGTATTCGTGATGCTTCTTATAGTGAATCTAAGCAGCTCGTAATTAGCAACTCTAGTCAACCTGTGGAACATTCAACTCTTTGCCATACCGAGACTTTTACAGATATAGTTAGTCCCAATAAATCACCAGGCAGTAAAAAAAGGCCAATGTCCAAGGCAGAAAGGCAAAGGCAAATGGCACTATTTGCCCAGCAACAACTTCTCGATGATCTTGAGTCCTTGGATCCTCTTGACCACGAGTCAATGAGAGAGGCAGCAGAAGCTACTTTTGATGTCTTGGATAGTTTATCAGTTAACTATCAACAATTTTCTGAGCATGTCTGGGAATTCATCAACTGTGCATCATCTTTAGCTGAAATTCAGAATTCCATGGAAAATGAGTTTTCTCCTCAAGAGCACATTCAACGTTATGAGGAGGAAGAAGTGAGACTGGCCGCCATCCGTGACAACTATTTCAAGACCAAGGTTTCCCTTGAGGAATCTCATCAGCTCAGTGAATCACTTCGTGAGGAGGCCTCTAGGCTAAAGGCCATGCTCCTTTTAATAGAAAATCAATTAGCCACTTGTGAGTCAGAAACATCCATGATAGAGACTAATCTTggtgaaattaaaagaaatatgcgGGAGGCTGAAACAAGCTTCAAGGTTGCTGCTGAGAAAGCTGAAATGGCAAGAAAACTTAATGAAGCGAGAGAAGAAAACCAACGTGCAGCCATTACAGCAATGGAGAATGCCAGGCTTGAACTAGAAAAATGA 1947 0.4258 MAMTIVSDSGPSIPSHPEHRPQECGPQPLAGTSASKRKRRMLTDTCFRCRQQGHWARHCPLNSPTTKSHTPVVEDSGIAKIQCRCGYGFCEIRTATTNPLNIGRNYYVCPIKRGKKCSNFVKWCDAPINESDLRPPPYKYPECRCGAGVCRKERENTFPNAGYFTCPVPKDHGSCGFHLWENMLLDTTSVVPVQKSSQGSVHFNWVDNQVDETNGRVLNIGSENFKRMRIVNDSQCSPISAVSEVPEEASAEREDHNGAVALSTLKDSHFPEFEFADDLVDLDMTNTMSWDSIVEEARLLSTLRRFPSQQREVERKILTIGDAPFGSISCLSPACFSKFLRSHFRISIDPVAGSLPMGWLGRLVFFTPSQGLKLSPPQPLFCCIFPSFNAIVVPKQESIRDASYSESKQLVISNSSQPVEHSTLCHTETFTDIVSPNKSPGSKKRPMSKAERQRQMALFAQQQLLDDLESLDPLDHESMREAAEATFDVLDSLSVNYQQFSEHVWEFINCASSLAEIQNSMENEFSPQEHIQRYEEEEVRLAAIRDNYFKTKVSLEESHQLSESLREEASRLKAMLLLIENQLATCESETSMIETNLGEIKRNMREAETSFKVAAEKAEMARKLNEAREENQRAAITAMENARLELEK 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g1613 648 Coils Coil 555 582 - -
Sto8g1613 648 Pfam GRF zinc finger 82 126 IPR010666 GO:0008270
Sto8g1613 648 Pfam Zinc knuckle 45 60 IPR001878 GO:0003676|GO:0008270
Sto8g1613 648 MobiDBLite consensus disorder prediction 1 37 - -
Sto8g1613 648 Gene3D - 27 72 - -
Sto8g1613 648 SMART c2hcfinal6 45 61 IPR001878 GO:0003676|GO:0008270
Sto8g1613 648 Coils Coil 613 648 - -
Sto8g1613 648 ProSiteProfiles Zinc finger CCHC-type profile. 46 60 IPR001878 GO:0003676|GO:0008270
Sto8g1613 648 PANTHER OS07G0190500 PROTEIN 28 645 - -
Sto8g1613 648 SUPERFAMILY Retrovirus zinc finger-like domains 35 67 IPR036875 GO:0003676|GO:0008270
Sto8g1613 648 PANTHER ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN 28 645 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g1613 Sto-Chr8 10358802 10361787 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g1613 - - vra:106766599 434.106