Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g1544 ATGGAAGTAACTGTTTCTCCACAAGCATTGCAGGCACCTAGTTGCAAAATTTTATCTGCCAGTTCTGAAAAAAATGTGTGGCTTGTTGTGCGAGAAGGATCTCTGAATGATGTAGAGTTAGCTTTGGCGCTATCGAAGAAGACTGGCTTTAATATCAATTCAAGGGACTCCTTTGGACTAACCCCTCTTCATATTGCAACTTGGAGGAACCACATCCCCATTGTCAGGAGGCTTCTTGCTGCTGGTGCAGACCCTGATGCTCGAGATGGAGAATCAGGATGGAGTTGCCTGCACAGGGCTCTGCATTTTGGTCATCTTGCTGTCGCAAGCATCCTTCTTCAGCATGGTGCCTCTATTACAATGGAAGACTCTAAATCTCGAATACCTGCGGATCTCTTATCTGGCCCAGTATTTCAGGTTCTTGGAAATGGATGTAATTCAGTAGCTACTGAGGTCTTTAGTTGGGGAAGTGGCACAAATTATCAGCTTGGAACAGGAAATGCACATATTCAAAAGTTACCATGCAAAGTTGATTCACTTAGTGGTTCTTATATTAAGTTAATTTCTGCTGCAAAGTTCCACAGCGTCGCTGTTACAGCTCGTGGGGAAGTGTATACCTGGGGATTTGGAAGGGGTGGTCGTCTAGGTCACCCTGATTTtgacatccacagTGGTCAAGCTGCAGTTATCACTCCCCGTCAGGTGACTTCTGGACTGGGTGGTCGTCGAGTGAAGGCTATTGCTGCTGCTAAGCATCATAGTGTTATTGCTACTGAAGGCGGGGAAGTGTTCACCTGGGGATCTAATAGAGAGGGACAGCTTGGCTACCCTTCTGTAGATACCCAGCCCACACCACGTAGAGTTACTTCTATAAGGTCAAAAATTGTTGCTGTTGCTGCAGCAAACAAGCACACGGCTGTAGTTTCTGATTTAGGTGAAGTTTTTACCTGGGGATGCAATAGAGAGGGTCAGCTTGGTTATGGCACTTCAAACTCAGCATCTAATTACACCCCACGCATTGTTGAATACTTGAAGGGAAAGACTTTAACTGGAGTTTCTGCTGCAAAATACCATACAGTTGTATTAGGATCAGATGGAGAGGTTTATACTTGGGGTCATCGACTTGTTACTCCAAGACGTGTAGTCATTACTAGGAACTTGAAGAAAAGCGGAACTGCCCTTTTGAAGTTTCACCGCATGGAACGGCTTCATGTGGTTTCCATAGCTGCAGGAATGGTATATAGTATGGCCCTAACAGATGATGGTGCATTGTTTTACTGGGTTTCCTCAGATCCTGATCTTAAATGCCAACAGCTATATGCTATGTGTGGAAGAAATATGGTGAGCATATCTGCTGGAAAGTACTGGAGTGCAGCAGTTACAGCGACGGGTGATGTTTATATGTGGGATGGGAAGAATGGTAAGGAAAAGTCACCTGTTGCCACTCGATTGCATGGTGTAAAGCGGGCTACTTCAGTTTCAGTTGGTGAAACCCATTTGCTGATTGTGGCTTCTCTATATCATCCTATTTATCCTCTCAATGAGAGGGAGACTTCTTGGAAGCTCAAGTTGAATAACAAGGATGATAAGGAAGAGTTTACTGAAGATATTTTATTTGAGGATGTGGAATCCAATGATATGGTTTCTGTTGTACAAAAAGATAATTTTGGGCCAAGGATCATACCCAGCTTAAAAAGTCTTTGTGAAAAAGTGGCAGCAGATTATCTTGTGGAGCCGCGAAATGCCATTCAATTGCTTGAGATTGCTGATTCTCTAGAAGCAAATGATTTAAAGAAATATTGTGAGGAGATTGTCATGCGCAACCTTGATTATATCTTCATGGTTTCATCACATACAGTGGCAAGTGCTTCACTAGACATTCTGGCTAACCTTGAGAGGTCATTAGACCAGAGATCATCTGAGCTATGGAGTCACCGCCGGCTCCCTACACTAACTGCTACTTTTCCTGCCATCATAAACAGTGAAGAGGATGATAGTGAAACAGAATTTCACCAGACTTGTGACAAACCATTGAACCTGAAATtggaaagagagggaagacttGATTTGTTTCTACTGCCTAAGGATGGTGCCAATCAAGAAATCTCTAAAGCAGTTCGAGCTCTAAGGAAGAAGTTGCAGCAGATTGAGATGCTTGAAGCTAAGCAATCCAAGGGATGTCATCTTGATGACCAGCAGATTGCAAAGCTTCAATCTAAGTCAGCTCTCGAGAGATCACTTGTAGAGCTAGGTGTTCATGTTGAAACTTCACGGAATGAAGAATCATCTTCTGTACTCCCAGAAGGGAAAGGTAGTAAAAAGGGTAAACTATCAAGAAAGCAGAGAAAGAACAGCAAATCAAGTGTGGTGCAAACTGAAGTTGAAGTGAAACCTGTTTATATTAGAACAGACGTATTATCAGAACCTGCGAAGGATATGTTGGACATTGAAATCTTGGAGGTTTCTGACACAAAGGTGGAAGATTCTTCGTGTGAACGAACCACAGTCAGCCAAGATGCAAAAGATTCAACCTTTTTTGTTCCGAAGAAAGAAGGTTCAGAGTTGCTACAAGATAAGGGTCAATCACTAAAGTTTCCTAAGAAGAAGATCAAGAAAGGTGGGCTTTCTATGTTTCTGAGTGGTGCTCTTGATGACACCCCAAAAGAGGCGACTCCCTCTCCACCAATGCCAAGATACGAGGGTCCTGCATGGGGTGGGGCCAAGTTACCAAAGGGTTCTGCTTCTCTCCGTGATATCCAGGTCGAGCAAAGCAAAACTAAAGGAAACCTGCGTACTAGGAACAAAGATCAGCAGGGAGAGGATCTTTCTGATAGTAGCAGTGGGAGGAAAATTCGGTTGAGTTCATTTCTTGCTTCCAGCCCTATACCAGTAGCCTCAACTTGCAGTCCCCAGGCATCTGATGGAGAAAGAAGTACCCCTCCTTGGGCTGCTTCAGGAACCCCACCTCACGTCTCTCGGCCATCTTTAAGGGACATCCAAGTGCAGCAGGGAAAAAAACATCAGAGTCTTTCCCATAGTCCAAAAACTAGAACAGCTGGATTTGCTGTTAGTACCAGTCAAGGCTCGCCATCTGAAGCCACTGGGATGAACCGCTGGTTCAAGCCCGAGGTGGAGACACCATCCTCAATTCGCTCTATTCAGATTGAGGAAAAGGCCATCAAGGATCTCAAGCGCTTCTACAGCAGCGTTAAGATTGTTAAAAACAAGTCTTAA 3234 0.4369 MEVTVSPQALQAPSCKILSASSEKNVWLVVREGSLNDVELALALSKKTGFNINSRDSFGLTPLHIATWRNHIPIVRRLLAAGADPDARDGESGWSCLHRALHFGHLAVASILLQHGASITMEDSKSRIPADLLSGPVFQVLGNGCNSVATEVFSWGSGTNYQLGTGNAHIQKLPCKVDSLSGSYIKLISAAKFHSVAVTARGEVYTWGFGRGGRLGHPDFDIHSGQAAVITPRQVTSGLGGRRVKAIAAAKHHSVIATEGGEVFTWGSNREGQLGYPSVDTQPTPRRVTSIRSKIVAVAAANKHTAVVSDLGEVFTWGCNREGQLGYGTSNSASNYTPRIVEYLKGKTLTGVSAAKYHTVVLGSDGEVYTWGHRLVTPRRVVITRNLKKSGTALLKFHRMERLHVVSIAAGMVYSMALTDDGALFYWVSSDPDLKCQQLYAMCGRNMVSISAGKYWSAAVTATGDVYMWDGKNGKEKSPVATRLHGVKRATSVSVGETHLLIVASLYHPIYPLNERETSWKLKLNNKDDKEEFTEDILFEDVESNDMVSVVQKDNFGPRIIPSLKSLCEKVAADYLVEPRNAIQLLEIADSLEANDLKKYCEEIVMRNLDYIFMVSSHTVASASLDILANLERSLDQRSSELWSHRRLPTLTATFPAIINSEEDDSETEFHQTCDKPLNLKLEREGRLDLFLLPKDGANQEISKAVRALRKKLQQIEMLEAKQSKGCHLDDQQIAKLQSKSALERSLVELGVHVETSRNEESSSVLPEGKGSKKGKLSRKQRKNSKSSVVQTEVEVKPVYIRTDVLSEPAKDMLDIEILEVSDTKVEDSSCERTTVSQDAKDSTFFVPKKEGSELLQDKGQSLKFPKKKIKKGGLSMFLSGALDDTPKEATPSPPMPRYEGPAWGGAKLPKGSASLRDIQVEQSKTKGNLRTRNKDQQGEDLSDSSSGRKIRLSSFLASSPIPVASTCSPQASDGERSTPPWAASGTPPHVSRPSLRDIQVQQGKKHQSLSHSPKTRTAGFAVSTSQGSPSEATGMNRWFKPEVETPSSIRSIQIEEKAIKDLKRFYSSVKIVKNKS 1077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g1544 1077 PRINTS Chromosome condensation regulator RCC1 signature 151 167 IPR000408 -
Sto8g1544 1077 PRINTS Chromosome condensation regulator RCC1 signature 204 220 IPR000408 -
Sto8g1544 1077 PRINTS Chromosome condensation regulator RCC1 signature 261 277 IPR000408 -
Sto8g1544 1077 PRINTS Chromosome condensation regulator RCC1 signature 298 314 IPR000408 -
Sto8g1544 1077 PRINTS Chromosome condensation regulator RCC1 signature 314 328 IPR000408 -
Sto8g1544 1077 PRINTS Chromosome condensation regulator RCC1 signature 459 480 IPR000408 -
Sto8g1544 1077 ProSiteProfiles Ankyrin repeat region circular profile. 58 89 - -
Sto8g1544 1077 SUPERFAMILY RCC1/BLIP-II 118 427 IPR009091 -
Sto8g1544 1077 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 366 421 IPR000408 -
Sto8g1544 1077 MobiDBLite consensus disorder prediction 948 980 - -
Sto8g1544 1077 Pfam Regulator of chromosome condensation (RCC1) repeat 261 308 IPR000408 -
Sto8g1544 1077 Pfam Regulator of chromosome condensation (RCC1) repeat 151 198 IPR000408 -
Sto8g1544 1077 Pfam Regulator of chromosome condensation (RCC1) repeat 312 362 IPR000408 -
Sto8g1544 1077 Pfam Regulator of chromosome condensation (RCC1) repeat 202 256 IPR000408 -
Sto8g1544 1077 ProSiteProfiles Ankyrin repeat profile. 58 90 IPR002110 GO:0005515
Sto8g1544 1077 PANTHER ANKYRIN REPEAT FAMILY PROTEIN / REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN 2 1076 - -
Sto8g1544 1077 Gene3D - 140 387 IPR009091 -
Sto8g1544 1077 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 312 365 IPR000408 -
Sto8g1544 1077 ProSiteProfiles Ankyrin repeat profile. 92 124 IPR002110 GO:0005515
Sto8g1544 1077 Coils Coil 699 722 - -
Sto8g1544 1077 MobiDBLite consensus disorder prediction 996 1034 - -
Sto8g1544 1077 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 261 311 IPR000408 -
Sto8g1544 1077 MobiDBLite consensus disorder prediction 881 1046 - -
Sto8g1544 1077 ProSiteProfiles Ankyrin repeat region circular profile. 92 123 - -
Sto8g1544 1077 MobiDBLite consensus disorder prediction 758 789 - -
Sto8g1544 1077 Gene3D - 392 507 IPR009091 -
Sto8g1544 1077 SMART ANK_2a 92 121 IPR002110 GO:0005515
Sto8g1544 1077 SMART ANK_2a 58 87 IPR002110 GO:0005515
Sto8g1544 1077 MobiDBLite consensus disorder prediction 928 947 - -
Sto8g1544 1077 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 202 260 IPR000408 -
Sto8g1544 1077 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 2 1076 - -
Sto8g1544 1077 Gene3D - 18 136 IPR036770 -
Sto8g1544 1077 Pfam Ankyrin repeats (3 copies) 38 123 IPR002110 GO:0005515
Sto8g1544 1077 SUPERFAMILY Ankyrin repeat 36 132 IPR036770 -
Sto8g1544 1077 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 150 201 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g1544 Sto-Chr8 9853900 9860310 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g1544 47 132 Acyl Lipid Metabolism Gene Families AT5G53470 37.209 7.61e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g1544 K24810 - gmx:100800604 1639.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g1544 8 9853900 9860310 Sto8g1544 8 9853900 9860310 ECH