Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g1332 ATGGATGCGTTCTGCTCCGACTGCAAGCGCCAGACCGAGGTCGTTTTCGATCACTCGGCCGGTGACACTGTTTGTTCCGAGTGTGGCCTCGTCCTAGAGTCCCATTCCATTGATGAGACATCCGAGTGGCGTACCTTCGCCAACGAGTCTGGCGATAATGACCCCGTCCGTGTCGGAGGACCCACCAACCCCCTCCTCGCTGATGGTGGCTTATCAACGGTCATAGCCAAGCCTAACGGGACCTCCGGCGAGTTTCTCTCGTCATCCCTTGGTCGGTGGCAGAACCGCGGCTCCAACCCGGATCGAGGCTTGATTTTGGCTTTTAAGACCATTGCAACTATGTCTGATAGGTTGGGACTTGTTGCAACCATTAAGGACCGAGCTAATGAGATATATAAGAGGGTTGAAGATCAGAAGTCTAGTAGAGGAAGAAATCAGGATGCTTTATTGGCTGCTTGCCTCTACATTGCTTGTCGACAAGAAGACAAGCCACGCACTGTAAAGGAAATCTGCTCTGTTGCCAATGGAGCCACAAAGAAGGAAATTGGCCGGGCAAAAGAATACATAGTGAAACAACTGGGTTTGGAGAATGGTCAGTCAGTGGAAATGGGAACAATACACGCTGGTGACTTTATGAGGCGATTTTGTTCTAATCTTGGTATGAACAATCAAGCTGTTAAAGCTGCTCAGGAAGCAGTTCAGAAATCAGAAGAGTTTGATATAAGGAGGAGCCCCATATCTATTGCAGCAGCAGTTATATACATCATAACTCAGCTGTCAGATGATAAGAAACCTCTCAAAGATATATCAGTTGCCACAGGAGTTGCAGAAGGAACCATTAGGAACTCGTACAAGGATCTTTATCCACACGTCTCAAAAATAATACCGAGCTGGTACGCTAAGGAGGAGGATCTGAAGAATCTGTGCAGCCCTTGA 936 0.4808 MDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGTSGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLENGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPSWYAKEEDLKNLCSP 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g1332 311 ProSiteProfiles Zinc finger TFIIB-type profile. 1 33 IPR013137 -
Sto8g1332 311 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 3 311 IPR000812 GO:0006352|GO:0070897
Sto8g1332 311 CDD CYCLIN 103 184 IPR013763 -
Sto8g1332 311 SUPERFAMILY Cyclin-like 206 307 IPR036915 -
Sto8g1332 311 Gene3D - 4 192 - -
Sto8g1332 311 SUPERFAMILY Zinc beta-ribbon 4 49 - -
Sto8g1332 311 Pfam TFIIB zinc-binding 5 46 IPR013137 -
Sto8g1332 311 PRINTS Transcription initiation factor IIB signature 18 38 IPR000812 GO:0006352|GO:0070897
Sto8g1332 311 PRINTS Transcription initiation factor IIB signature 40 53 IPR000812 GO:0006352|GO:0070897
Sto8g1332 311 PRINTS Transcription initiation factor IIB signature 54 75 IPR000812 GO:0006352|GO:0070897
Sto8g1332 311 PRINTS Transcription initiation factor IIB signature 151 170 IPR000812 GO:0006352|GO:0070897
Sto8g1332 311 PRINTS Transcription initiation factor IIB signature 178 193 IPR000812 GO:0006352|GO:0070897
Sto8g1332 311 PRINTS Transcription initiation factor IIB signature 211 229 IPR000812 GO:0006352|GO:0070897
Sto8g1332 311 PRINTS Transcription initiation factor IIB signature 243 259 IPR000812 GO:0006352|GO:0070897
Sto8g1332 311 PRINTS Transcription initiation factor IIB signature 275 289 IPR000812 GO:0006352|GO:0070897
Sto8g1332 311 ProSitePatterns Transcription factor TFIIB repeat signature. 143 158 IPR023486 -
Sto8g1332 311 CDD CYCLIN 206 288 IPR013763 -
Sto8g1332 311 SUPERFAMILY Cyclin-like 104 195 IPR036915 -
Sto8g1332 311 Pfam Transcription factor TFIIB repeat 203 289 IPR013150 GO:0017025
Sto8g1332 311 Pfam Transcription factor TFIIB repeat 102 184 IPR013150 GO:0017025
Sto8g1332 311 Gene3D - 207 310 - -
Sto8g1332 311 SMART cyclin_7 210 289 IPR013763 -
Sto8g1332 311 SMART cyclin_7 109 191 IPR013763 -
Sto8g1332 311 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 3 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g1332 Sto-Chr8 8485902 8488931 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g1332 K03124 - csv:101209725 606.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g1332 8 8485902 8488931 Sto13g2838 13 33732823 33736353 CCT
Sto8g1332 8 8485902 8488931 Sto8g1332 8 8485902 8488931 ECH