Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g1291 ATGATATATGGGTATGCTCAAATGGGTGAGGATGAGGAGGCTCTTGGGCTATTTAAGCAAGCACTGGTCGAAGATATGGATGTTAATGATTTTACATTCTCAAGTGTTCTACGTGTTTGTGGCAGTTCAACCTTGCTTGAATTGGCTTATCGAATTTTTGATGAGATAACCGTGAAAAATCTTGGTATGTGGAATGCAATGCTGATAGCATGTGCTCAGCATGCACACACAAACAAAACTTTTGAATTGTTCAAGCAGATAGAAAGCGTTGGGATGAAGCCCAATTTTATAACCTTCTTATGCATACTCTATGCTTGCAGTCATGCAGGATTGGTAGAGAGTGGCCAATATTACTTTCAGATGATGAAAGACTATGGTATTGAACCAGAGGCCCAACACTACGCCTCCATGGTGGATTTGCTTGGTCGTGCTGGAAAACTGCAAGAAGCAGTTCAGATAGTTAGAGAAATGCCCATGGAACCAACAGAATGTGTTTGGGGAGCTTTATTGACTGGGTGTAGAATACATGGGAACACTGAATTGGCCTCCTATGTTGCTGATAGAGTCTTTGAGTTGGGTCCTGTAAGCTCAGGTCTCCATGTCCTTCTATCCAATGCTTATGCTGCTGCAGGAAGATGGGAGGAAGCAGCGAAAGCAAGGAAGATGCTGAGGGACAAAGGAATAAAGAAGGAAACTGGTTTGAGCTGGGTAGAGGAGGGAAATAGAGTTCACACATTTGCTGCTGGGGATAGGTGTCATGCGAAAACTATAGAAATTTATGAGAAGTTGGAGGAGTTAGGGGAAGAAATGGAGAAAGCGGGTTATGTGGCAGACACATCCTTTGTGTTGAAACAAGTGGATGGTGAAGAGAAGAATCAGACAATTAGGTATCACAGTGAAAGGCTAGCCATAGCATTTGGCCTCATTACCTTCCCTCCTGAACGACCCATTAGAGTAATGAAGAACTTGCGTGTTTGTGGTGATTGCCATACTGCAATCAAGTTTATTAGCAAATGCACTGGAAGGGTAATCATTGTGAGGGATAATAACCGGTTCCACCGATTTGAGGATGGAAAATGTACTTGTGGGGATTATTGGTGa 1101 0.4296 MIYGYAQMGEDEEALGLFKQALVEDMDVNDFTFSSVLRVCGSSTLLELAYRIFDEITVKNLGMWNAMLIACAQHAHTNKTFELFKQIESVGMKPNFITFLCILYACSHAGLVESGQYYFQMMKDYGIEPEAQHYASMVDLLGRAGKLQEAVQIVREMPMEPTECVWGALLTGCRIHGNTELASYVADRVFELGPVSSGLHVLLSNAYAAAGRWEEAAKARKMLRDKGIKKETGLSWVEEGNRVHTFAAGDRCHAKTIEIYEKLEELGEEMEKAGYVADTSFVLKQVDGEEKNQTIRYHSERLAIAFGLITFPPERPIRVMKNLRVCGDCHTAIKFISKCTGRVIIVRDNNRFHRFEDGKCTCGDYW 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g1291 366 Pfam E motif 176 238 IPR046848 -
Sto8g1291 366 Pfam PPR repeat 31 59 IPR002885 -
Sto8g1291 366 Pfam PPR repeat 1 20 IPR002885 -
Sto8g1291 366 Pfam Pentacotripeptide-repeat region of PRORP 68 158 IPR033443 -
Sto8g1291 366 Pfam DYW family of nucleic acid deaminases 274 366 IPR032867 GO:0008270
Sto8g1291 366 Gene3D Tetratricopeptide repeat domain 46 280 IPR011990 GO:0005515
Sto8g1291 366 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 95 129 IPR002885 -
Sto8g1291 366 PANTHER BNAA10G28390D PROTEIN 1 48 - -
Sto8g1291 366 PANTHER BNAA10G28390D PROTEIN 46 309 - -
Sto8g1291 366 PANTHER OS01G0913400 PROTEIN-RELATED 1 48 - -
Sto8g1291 366 PANTHER OS01G0913400 PROTEIN-RELATED 46 309 - -
Sto8g1291 366 Pfam E+ motif 243 270 IPR046849 -
Sto8g1291 366 SUPERFAMILY TPR-like 5 225 IPR011990 GO:0005515
Sto8g1291 366 TIGRFAM PPR: pentatricopeptide repeat domain 97 129 IPR002885 -
Sto8g1291 366 TIGRFAM PPR: pentatricopeptide repeat domain 63 95 IPR002885 -
Sto8g1291 366 TIGRFAM PPR: pentatricopeptide repeat domain 134 157 IPR002885 -
Sto8g1291 366 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 60 94 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g1291 Sto-Chr8 8122963 8124168 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g1291 1 366 Glycoside Hydrolase AT3G49170 39.892 4.92e-99 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g1291 - - vvi:109122965 625.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g1291 8 8122963 8124168 Sto8g1291 8 8122963 8124168 ECH