Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g1103 ATGAAAGGTTCTTCATCACTCGCTCCAGTCGCCACCAAGAGGCTAGATGGTAAGGTAGCTTTCATAACTGGAGGCGCCAATGGCATTGGCGAGGCCACCGCGATGCTTTTCGTACATCACGGTGCCAAAGTCATCATCGCCGACATCCAAGACGATCTGGGCCGCTCAATTTGTGAGGACAATCCTTCCATCACTTATGTCCACTGCGACGTCTCAAGTGATTCCGATGTTGAAACTGCAATTAATGCTGCAATCTCCAAGCATGGCAAGCTTGACATAGTGTTCAGCAATGCAGGCATCGCTGGTGACGTGGACAACTCCTCCATACTTTGCATTAATAAGGAGGAGTTGAAGAGAGTTTTCGAGGTGAACGTGTACGGCTCTTTCCTGGTAGCCAAACACGCCGCTAAAGTAATGATTCCTCAAAAGAAAGGGAGTATCATCTTCACCTCAAGCGTAGTGTCGGTGATTAGTGGAATAGGACCGCTTGCTTACTCGGCATCGAAGCATGCAGTGGTGGGTCTAACGAAGAATTTGTGTGTGGAATTGGGAAAGCACGGAATTAGAGTGAACTGCATATCGCCATATGGGGTGGCGACACCTTTGGTGATGAAGGAAATGAAGATGGAAAAAGAGGACGCGGAGAGGATGTATTTGGAGGGTGGGAATTTGAAAGGAGTGGTGCTGAGTGCAGAGGACGTGGCAGAAGCTGCTATGTTTTTGGGCAGTGACGAGTCCAAGTACGTGAGTGGTCTCAACCTTGTAGTGGATGGAGGTTTTAGTACCACAAATATAGCTCTGCACAACGAGAACAGATCTACAGCAAGAGAGAACTAA 837 0.4827 MKGSSSLAPVATKRLDGKVAFITGGANGIGEATAMLFVHHGAKVIIADIQDDLGRSICEDNPSITYVHCDVSSDSDVETAINAAISKHGKLDIVFSNAGIAGDVDNSSILCINKEELKRVFEVNVYGSFLVAKHAAKVMIPQKKGSIIFTSSVVSVISGIGPLAYSASKHAVVGLTKNLCVELGKHGIRVNCISPYGVATPLVMKEMKMEKEDAERMYLEGGNLKGVVLSAEDVAEAAMFLGSDESKYVSGLNLVVDGGFSTTNIALHNENRSTAREN 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g1103 278 PANTHER SECOISOLARICIRESINOL DEHYDROGENASE-LIKE 11 268 - -
Sto8g1103 278 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 11 268 - -
Sto8g1103 278 Pfam Enoyl-(Acyl carrier protein) reductase 24 261 - -
Sto8g1103 278 Gene3D - 5 274 - -
Sto8g1103 278 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 89 100 IPR002347 -
Sto8g1103 278 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 145 153 IPR002347 -
Sto8g1103 278 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 165 184 IPR002347 -
Sto8g1103 278 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 16 262 IPR036291 -
Sto8g1103 278 PRINTS Glucose/ribitol dehydrogenase family signature 19 36 IPR002347 -
Sto8g1103 278 PRINTS Glucose/ribitol dehydrogenase family signature 89 100 IPR002347 -
Sto8g1103 278 PRINTS Glucose/ribitol dehydrogenase family signature 139 155 IPR002347 -
Sto8g1103 278 PRINTS Glucose/ribitol dehydrogenase family signature 165 184 IPR002347 -
Sto8g1103 278 PRINTS Glucose/ribitol dehydrogenase family signature 186 203 IPR002347 -
Sto8g1103 278 PRINTS Glucose/ribitol dehydrogenase family signature 224 244 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g1103 Sto-Chr8 6961274 6962237 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g1103 15 259 Acyl Lipid Metabolism Gene Families AT3G55290 31.538 5.48e-29 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g1103 - - gmx:100803985 338.961
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g1103 8 6961274 6962237 Sto8g1103 8 6961274 6962237 ECH