Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g1014 ATGGCGGAGCATTTGGCGTCGATATTCGGAACGGAAAAGGACAGGGTGAACTGTCCCTTTTACTTCAAGATCGGAGCTTGCAGGCATGGCGACCGCTGCTCCAGACTTCACACTAAGCCCACCATTAGCCCAACTCTCCTTCTCTCCAACATGTACCAGAGGCCTGATATGATCACCCCTGTCGTTGACCCTAATCAAGGGCAAGCACTTGACCCCGATAAGGTCCAAGTTCACTTCGAGGATTTCTATGAAGATCTATTTGAGGAGCTGAGCAAGTATGGAGAAATTCAGAGCTTGAATATTTGTGATAATTTGGCTGATCACATGGTCGGTAACGTATATGTTCAGTTTAAGGAGGAAGACCATGCTGCTAATGCGCTAATGAACCTGACTGGTAGATTTTATTCAGGACTCGGGAGGAAAGTAAAGGTTATTGTTGTTATAGATGTAGAAGCGGAATTTGATAAACTAGGGACAAAGCTTATAACCAGATTTGTGAACTGTAATAACTATGCAACCGACCTTCCAAACCCTAAAGGGCGACCCATCATTGTTGATTTCTCTCCTGTGACGGATTTTCGAGAAGCTACTTGTAGGCAATATGAGGAAAATGTATGTAATCGAGGTGGCTATTGCAACTTTATGCACCTGAAGAAGATTAGCAGGGAGTTGAGAAAGCGATTATTTGGGAGAAATAGGAGATGGCAGGGCCGCAGTAGAAGCAGAAGCCGGAGCCCTCCCAGGCACCGTAACTATGATGACCGTTCGCATTCTGGCCGTGGTTCTGGTAGAAGAGATTATGACAGACAACATGGCCACTCAGGTAGGAATAGGCTACCTAGAAGTCGAAGTCCTCGAAGAAGAAGCAATCGAAGTAGAAGTCCAGTGGGAAGGGATAGGAGTCCAATCAGAGAAAGTAGTGCGGAAAGGAGAGCTAAAATAGAGCAATGGAACAGGGAAAAGGAACTGGAAGTATCTGGAAACAATAGAAATGACAGTGGTGACGATCAACAGGGTGTTGCGCAAAATGGAGATGAAATTGGTGTTTTCTTAGAAGACTCTGCAGGCCTCTTGATGCTAGCTTCAGCCTTCAGGAAAGTAAAGGCAGTTTATGGGAGAGCTCAAATTCCTTCTCAAACACCAAATCGAAAGATATCTGAGGAATTTTTTCAGAGGAAAGAATTCCAATCCCAAGCTTCTGATCACCAAATTTCACAGTCAGGCAGACTGGTTCACTCTCTTTCTCCTGCTTGA 1254 0.4498 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPTISPTLLLSNMYQRPDMITPVVDPNQGQALDPDKVQVHFEDFYEDLFEELSKYGEIQSLNICDNLADHMVGNVYVQFKEEDHAANALMNLTGRFYSGLGRKVKVIVVIDVEAEFDKLGTKLITRFVNCNNYATDLPNPKGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISRELRKRLFGRNRRWQGRSRSRSRSPPRHRNYDDRSHSGRGSGRRDYDRQHGHSGRNRLPRSRSPRRRSNRSRSPVGRDRSPIRESSAERRAKIEQWNREKELEVSGNNRNDSGDDQQGVAQNGDEIGVFLEDSAGLLMLASAFRKVKAVYGRAQIPSQTPNRKISEEFFQRKEFQSQASDHQISQSGRLVHSLSPA 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g1014 417 MobiDBLite consensus disorder prediction 246 275 - -
Sto8g1014 417 Gene3D - 43 146 IPR012677 -
Sto8g1014 417 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 80 144 IPR000504 GO:0003723
Sto8g1014 417 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 14 37 IPR000571 GO:0046872
Sto8g1014 417 PANTHER U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT 1 344 IPR009145 GO:0000398|GO:0003723|GO:0089701
Sto8g1014 417 SMART rrm2_1 68 143 IPR003954 GO:0003676
Sto8g1014 417 MobiDBLite consensus disorder prediction 276 291 - -
Sto8g1014 417 ProSiteProfiles Zinc finger C3H1-type profile. 12 40 IPR000571 GO:0046872
Sto8g1014 417 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 84 137 IPR000504 GO:0003723
Sto8g1014 417 MobiDBLite consensus disorder prediction 234 341 - -
Sto8g1014 417 MobiDBLite consensus disorder prediction 292 329 - -
Sto8g1014 417 MobiDBLite consensus disorder prediction 396 417 - -
Sto8g1014 417 ProSiteProfiles Zinc finger C3H1-type profile. 192 219 IPR000571 GO:0046872
Sto8g1014 417 CDD RRM_U2AF35B 44 189 - -
Sto8g1014 417 SUPERFAMILY RNA-binding domain, RBD 77 137 IPR035979 GO:0003676
Sto8g1014 417 SMART c3hfinal6 13 39 IPR000571 GO:0046872
Sto8g1014 417 SMART c3hfinal6 192 218 IPR000571 GO:0046872
Sto8g1014 417 MobiDBLite consensus disorder prediction 394 417 - -
Sto8g1014 417 PRINTS U2 auxiliary factor small subunit signature 18 37 IPR009145 GO:0000398|GO:0003723|GO:0089701
Sto8g1014 417 PRINTS U2 auxiliary factor small subunit signature 37 57 IPR009145 GO:0000398|GO:0003723|GO:0089701
Sto8g1014 417 PRINTS U2 auxiliary factor small subunit signature 76 91 IPR009145 GO:0000398|GO:0003723|GO:0089701
Sto8g1014 417 PRINTS U2 auxiliary factor small subunit signature 104 126 IPR009145 GO:0000398|GO:0003723|GO:0089701
Sto8g1014 417 PANTHER SPLICING FACTOR U2AF SMALL SUBUNIT A 1 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g1014 Sto-Chr8 6363809 6369430 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g1014 K12836 - gmx:100783847 439.113
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g1014 8 6363809 6369430 Sto8g1014 8 6363809 6369430 ECH