Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sto8g1012 | ATGGGAAGGCGCGCTGCTACGCTTCTCCTTCCCAAATTGCAAGTATCGCTCCGGAAGGAACACTGTAATTCCATTTCTGTCCctctttcctttcccttttgcACTCAATCTGTTTCAGAAGCACTTCCTGAAACCCACCATGCCCAGAACTCTGATCTTTCCTTTGAAAATAAGTATTCTTTCGATCCCCAAGAACAGGAACGGATTGAACAAGTTCGAAGGTTTCAAAATTTACTTCAAGAAGATTCCGGAAATGCCGCCCAAAGCTTCATCAAATCCCTTGTTATCTCTAAAACCCCATTTTCTTCTCCCTTCGAACTTTTCGCCTTCTTCTCCCACTCTTTACCCTCCTTGAAGCCCGTCTTCTCGAATATGCTGTTTCGGGCTTGCTCCGAGTCGGAATTGATCAATGAAGTTACGGAGTTATACTCTTTGATGAGGAAAGACTGTATGCTTCCTTCGACAGGTTCTGTGAATCGGTTACTCGAAACTTTGGTGACATTGAAGCAGTTTGAGAAAACTCTTGATCTGTTCTCGAATTTTGTGGAGTCCGGTGTTCGACCTAATGCTTTCTCCTACGGTAAAGCTGTTCAGGCAGCAGTGATGATGAAGGACTTAAAAAGGGGTTTTGAATTGATGAATGCCATGGAGGAGGGAGGGGTTGGCCCATCTGTATTTACGTATAACGTGGTGATAGGTGGTTTGTGTAAAGTGAGGAGAATCGAAGATGCTTACAACCTATTTGATGAAATGATTAAGAGAAAACTAGTCCCGAATTTGGTTACTTACAATACTCTGATTGACGGATGCTGTAAGGTGGGAGAAATAGAAAGAGCTTTTAGTTTGAGAGAGAGGATGAGGACTGAAGATGTGAAGCCTAATCTTGTCACATACAATGCCTTATTAAATGGTCTTTGTCATTCACAGAGGATGGATGAAGCGAGGAAGTTGTTGCAAGAGATGGAGGCAAGTAGGTTTCTGCCTGATGGATTTACTAGTGTTGTATTTGATGATCTCTCTAGCTGTGGAAATTATAATGCTTCTTTGGATCTACATGAAAAAGTGCTTCACAAAGCGGAAACGATTGATGAGTATACTTGTAGTATTTTGTTGGATGGACTATGCAGAGTGGGGATGACTGAAAAGGCTGAGGAGGTTTTGGCCAAACTAACAGAGAATGGATTTATACCAAGTAAGATAGTATATAACATATTAGTGAATGCATATTGTCAAGAGGGTGACGTGAAGAAAGCCATACTGACAATCAAACAAATGGAAGAACGTGGGCTGAAGGCTAGCTGTATCACTTTCAATACCCTTATTAACAAGTTTTTTGATACAAAGGAAGTGGACCAGGCAGAAAGATGGTTAAAGAAGATGGAAGAGCAAGGTATTTCCCGCAGTGTGGAGACATACAACATTTTGATTAATGGTTACGCCAGCATGACTCAGTTCGACAAATGttttcagattcttgaggaaaTGGAAGAAACAGGGATAAAGCCAACTGCCTTAAGCTATGGTTCTCTTATAAACTGTCTATGCAAAGATGGTAAGCTTCTTGAAGCTGAACTTATGCTTTCGGATATGGCAGGTCGAGGGGTTTCTCCAAACGcagaaatatataatatgctCATTGAAGGTAGTTGCTCGAGGGGTAAAATGAAAGAAGCCTTCAATTTTCTTGATGAAATGGTGAAAAAGGGAACAGGTCCAACTCTTGTAACATATAATACGCTCATAAGTGGACTCGGAAGAAATGGAAGGACATCAGAAGCTGAGGAACTTTTACTCCAAATGACTAGCAAAGGATGCAATCCAGACGTAATCACATACAATTCCCTGATCTCCGGATATGCCAAGTCAGGAAACACCCAGAAATGCCTTGAGTTATATGATAATATGAAGAATCTGGGAATAAAACCTACTGTTAGGACATTTCATCCTTTGATCAATGCATGCAGCAAGGAAGGGGTGGAGACAGTAGAGAGACTGTTTCATGAAATGTTGGAAATAGATTTGGTTCCAGACCGAATTGTATATAATTCCATGATTTACAGTTACGCTGAAGGAGGAGATGTTGAAAAAGCTATGTCCCTACTCCATCAGATGGTTGAACATGGGATTCAGCCGGACAAGGTAACTTATAACAGCTTGATTGTTGTATACCTTAGAGATAGAAGGGTGTCAGAAGTAAAGCTTCTGATTTATGATATGAAAGTTAAAGGAGTGGTTCCAATGGCTGATACATATAACATACTGGTAAAAGGACATTGCGACTTGAAGGATTTCCAAGGCGCCTACTTTTGGCTTATCACTCAAATCGAGCTCGCACCCAATCGCCTTAGTGAAGGTCCCATTGCCATCCGACAACAAAAGCACCTCGTCGTTGATCTTCAAGTCATCCTTCCACGCCTTCATCACAAAGGCGTCGTTGACCGAAATGCAGGCGATTGTGTCGACGCCCTTCGATTTCAGCTCGGCGGATTTTTCAACGAAGCCCGGAACGTGTTTCTGAGAACAGGTAGGGGTGAATGCGCCGGGGACGGCGAAGAATATGGCCTTCTTTCCCTTGGTGAGATCGGAGACCGTTGTGGTCTGGACCTCGCCGGCTTGGTCGAGGTAGGAGAAGGTGGCTTCAGGGAGCTTGTCGCCGACGGCGATGGTGGCGGAAATGGTGGATTTGGTAGTGAAGGCAGTTGA | 2703 | 0.4229 | MGRRAATLLLPKLQVSLRKEHCNSISVPLSFPFCTQSVSEALPETHHAQNSDLSFENKYSFDPQEQERIEQVRRFQNLLQEDSGNAAQSFIKSLVISKTPFSSPFELFAFFSHSLPSLKPVFSNMLFRACSESELINEVTELYSLMRKDCMLPSTGSVNRLLETLVTLKQFEKTLDLFSNFVESGVRPNAFSYGKAVQAAVMMKDLKRGFELMNAMEEGGVGPSVFTYNVVIGGLCKVRRIEDAYNLFDEMIKRKLVPNLVTYNTLIDGCCKVGEIERAFSLRERMRTEDVKPNLVTYNALLNGLCHSQRMDEARKLLQEMEASRFLPDGFTSVVFDDLSSCGNYNASLDLHEKVLHKAETIDEYTCSILLDGLCRVGMTEKAEEVLAKLTENGFIPSKIVYNILVNAYCQEGDVKKAILTIKQMEERGLKASCITFNTLINKFFDTKEVDQAERWLKKMEEQGISRSVETYNILINGYASMTQFDKCFQILEEMEETGIKPTALSYGSLINCLCKDGKLLEAELMLSDMAGRGVSPNAEIYNMLIEGSCSRGKMKEAFNFLDEMVKKGTGPTLVTYNTLISGLGRNGRTSEAEELLLQMTSKGCNPDVITYNSLISGYAKSGNTQKCLELYDNMKNLGIKPTVRTFHPLINACSKEGVETVERLFHEMLEIDLVPDRIVYNSMIYSYAEGGDVEKAMSLLHQMVEHGIQPDKVTYNSLIVVYLRDRRVSEVKLLIYDMKVKGVVPMADTYNILVKGHCDLKDFQGAYFWLITQIELAPNRLSEGPIAIRQQKHLVVDLQVILPRLHHKGVVDRNAGDCVDALRFQLGGFFNEARNVFLRTGRGECAGDGEEYGLLSLGEIGDRCGLDLAGLVEVGEGGFRELVADGDGGGNGGFGSEGS | 900 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sto8g1012 | 900 | Pfam | PPR repeat | 290 | 322 | IPR002885 | - | |
| Sto8g1012 | 900 | Gene3D | Tetratricopeptide repeat domain | 102 | 199 | IPR011990 | GO:0005515 | |
| Sto8g1012 | 900 | Gene3D | Tetratricopeptide repeat domain | 448 | 553 | IPR011990 | GO:0005515 | |
| Sto8g1012 | 900 | Gene3D | Tetratricopeptide repeat domain | 554 | 658 | IPR011990 | GO:0005515 | |
| Sto8g1012 | 900 | Gene3D | Tetratricopeptide repeat domain | 336 | 447 | IPR011990 | GO:0005515 | |
| Sto8g1012 | 900 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 398 | 432 | IPR002885 | - | |
| Sto8g1012 | 900 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MITOCHONDRIAL | 62 | 771 | - | - | |
| Sto8g1012 | 900 | TIGRFAM | PPR: pentatricopeptide repeat domain | 296 | 329 | IPR002885 | - | |
| Sto8g1012 | 900 | TIGRFAM | PPR: pentatricopeptide repeat domain | 506 | 539 | IPR002885 | - | |
| Sto8g1012 | 900 | TIGRFAM | PPR: pentatricopeptide repeat domain | 714 | 746 | IPR002885 | - | |
| Sto8g1012 | 900 | TIGRFAM | PPR: pentatricopeptide repeat domain | 400 | 433 | IPR002885 | - | |
| Sto8g1012 | 900 | TIGRFAM | PPR: pentatricopeptide repeat domain | 471 | 503 | IPR002885 | - | |
| Sto8g1012 | 900 | TIGRFAM | PPR: pentatricopeptide repeat domain | 575 | 609 | IPR002885 | - | |
| Sto8g1012 | 900 | TIGRFAM | PPR: pentatricopeptide repeat domain | 610 | 644 | IPR002885 | - | |
| Sto8g1012 | 900 | TIGRFAM | PPR: pentatricopeptide repeat domain | 435 | 468 | IPR002885 | - | |
| Sto8g1012 | 900 | TIGRFAM | PPR: pentatricopeptide repeat domain | 365 | 398 | IPR002885 | - | |
| Sto8g1012 | 900 | TIGRFAM | PPR: pentatricopeptide repeat domain | 679 | 712 | IPR002885 | - | |
| Sto8g1012 | 900 | TIGRFAM | PPR: pentatricopeptide repeat domain | 261 | 294 | IPR002885 | - | |
| Sto8g1012 | 900 | TIGRFAM | PPR: pentatricopeptide repeat domain | 541 | 573 | IPR002885 | - | |
| Sto8g1012 | 900 | TIGRFAM | PPR: pentatricopeptide repeat domain | 226 | 259 | IPR002885 | - | |
| Sto8g1012 | 900 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 259 | 293 | IPR002885 | - | |
| Sto8g1012 | 900 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 677 | 711 | IPR002885 | - | |
| Sto8g1012 | 900 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 433 | 467 | IPR002885 | - | |
| Sto8g1012 | 900 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 224 | 258 | IPR002885 | - | |
| Sto8g1012 | 900 | Pfam | PPR repeat | 365 | 395 | IPR002885 | - | |
| Sto8g1012 | 900 | Pfam | PPR repeat | 575 | 605 | IPR002885 | - | |
| Sto8g1012 | 900 | Pfam | Pentacotripeptide-repeat region of PRORP | 406 | 573 | IPR033443 | - | |
| Sto8g1012 | 900 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 468 | 502 | IPR002885 | - | |
| Sto8g1012 | 900 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 573 | 607 | IPR002885 | - | |
| Sto8g1012 | 900 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 608 | 642 | IPR002885 | - | |
| Sto8g1012 | 900 | Pfam | PPR repeat family | 607 | 655 | IPR002885 | - | |
| Sto8g1012 | 900 | Pfam | PPR repeat family | 676 | 720 | IPR002885 | - | |
| Sto8g1012 | 900 | Pfam | PPR repeat family | 223 | 272 | IPR002885 | - | |
| Sto8g1012 | 900 | SUPERFAMILY | HCP-like | 345 | 524 | - | - | |
| Sto8g1012 | 900 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 712 | 746 | IPR002885 | - | |
| Sto8g1012 | 900 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 363 | 397 | IPR002885 | - | |
| Sto8g1012 | 900 | Gene3D | Tetratricopeptide repeat domain | 659 | 783 | IPR011990 | GO:0005515 | |
| Sto8g1012 | 900 | Gene3D | Tetratricopeptide repeat domain | 200 | 335 | IPR011990 | GO:0005515 | |
| Sto8g1012 | 900 | PANTHER | ATPASE EXPRESSION PROTEIN 3 | 62 | 771 | - | - | |
| Sto8g1012 | 900 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 294 | 328 | IPR002885 | - | |
| Sto8g1012 | 900 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 538 | 572 | IPR002885 | - | |
| Sto8g1012 | 900 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 503 | 537 | IPR002885 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Sto8g1012 | Sto-Chr8 | 6345262 | 6349600 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Sto8g1012 | 368 | 769 | Glycosyltransferase | AT1G05670 | 30.521 | 1.62e-63 | 226 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sto8g1012 | - | - | gmx:100786292 | 908.286 |