Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g0884 ATGATCAACGCACCCAACGGTATGATATCCACCTCTTCATCCGCTACCGCACAAACACCAGCTCTCAAGACTTATTTTAAGACTCCTGAAGGTCGCTACAAGCTTCACTACGAGAAGACACACCCTTCCGCCCTCCTTCACTACGCCCACGGCAAAACCGTCACACAGGTAACTCTTGCACATCTCAAGGAGAAGCCAGCACCTTCAACACCGACCTCTGCATCTTCAAGTTTTAGTGCCAGCAGTGGAGTACGGTCAGCAGCTGCTAGATTGCTGGGAGGAGGCAATGGAAGCCGAGCTCTTAGTTTTGTTGGAGGGAATGGTAGCAGCAAGAATGTTGGACTAAACAGTAGGATTGGTTCAATAGGTGCTTCAAGTTCAAGTAATTTAATGGCCAATTCAAATTTTGATGGGAAAGGGACATACTTGATCTTCAATGTTGGTGATGCAATTTTTGTCAGTGATTTGAATTCTCAAGACAAGGATCCCATAAAGTCTATTCATTTCAGTAATTCAAATCCTGTGTGCCACGCCTTTGATCAGGAAGCTAAGGATGGCCATGATTTGCTCATTGGTTTGAGTTCTGGTGATGTTTACTCAGTGTCACTGAGACAACAATTACAGGATGTTGGTAAAAAGCTTGTAGGAGCTCAGCATTACAATAAAGATGGTTCTGTCAATAACagTCGTTGTACTAGTATTACATGGATCCCTGGAGGTGATGGTGCCTTTGTTGTTGCTCACGCCGATGGGAATTTGTATGTATATGAAAAGAGCAAAGATGGTGCTGGTGATTCTTCATTCCCGGTTATTAAAGATCAAACACAATTTTCTGTTGCCCATGCACGATACAGTAAGAGTAATCCAGTAGCCAGATGGCATATATGCCAGGGTTCTATTAACAGTATTTCTTTCTCAAGTGATGGTGCATACTTAGCAACTGTCGGAAGGGATgGCTATTTACGAGTGTTTGATTACTCAAAGGAACAACTTATATGTGGTGGGAAAAGTTACTATGGTGCTCTGTTATGTTGTGCTTGGAGCATGGatggaaaatatattttgactgGAGGAGAAGATGATTTAGTTCAAGTTTGGAGCATGGAGGATCGTAAGGTTGTTGCATGGGGTGAGGGACACAACTCATGGGTCAGCGGAGTGGCTTTTGATTCATATTGGACGTCACCAAATTCAAATGACAATGATGAGACTATTATGTATAGGTTTGGCTCTGTTGGTCAGGATACACAATTGCTTCTATGGGACCTGGAAATGGATGAGATTGTAGTACCATTGCGGCGTGCGCCTGGTGGATCTCCCACTTTCAGTGCTGGAAGCCAGTCATCCCACTGGGACAGTGTTGTACCATTGGGTACACTGCAACCTGCTCCAAGCATGCGGGATGTTCCAAAGATCTCACCTCTGGTTGCTCATCGTGTGCATACTGAACCTCTCTCAGGCTTGATATTTACCCAGGAATCTGTACTTACTGCCTGTCGGGAGGGACATGTAAAAGTCTGGATGAGACCTGGGATTGCTGAGGGTCAACCAAGCAACTCTGAAACCTTATTAGCTACCAACCTGAAGGACAAACCTTTAGTGTCAAGCAAGGTTAGCAATACTTGTTACAAATAA 1635 0.4379 MINAPNGMISTSSSATAQTPALKTYFKTPEGRYKLHYEKTHPSALLHYAHGKTVTQVTLAHLKEKPAPSTPTSASSSFSASSGVRSAAARLLGGGNGSRALSFVGGNGSSKNVGLNSRIGSIGASSSSNLMANSNFDGKGTYLIFNVGDAIFVSDLNSQDKDPIKSIHFSNSNPVCHAFDQEAKDGHDLLIGLSSGDVYSVSLRQQLQDVGKKLVGAQHYNKDGSVNNSRCTSITWIPGGDGAFVVAHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHARYSKSNPVARWHICQGSINSISFSSDGAYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWTSPNSNDNDETIMYRFGSVGQDTQLLLWDLEMDEIVVPLRRAPGGSPTFSAGSQSSHWDSVVPLGTLQPAPSMRDVPKISPLVAHRVHTEPLSGLIFTQESVLTACREGHVKVWMRPGIAEGQPSNSETLLATNLKDKPLVSSKVSNTCYK 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g0884 544 SUPERFAMILY WD40 repeat-like 151 507 IPR036322 GO:0005515
Sto8g0884 544 PANTHER WD REPEAT PROTEIN 5 540 - -
Sto8g0884 544 PANTHER LOW QUALITY PROTEIN: WD REPEAT-CONTAINING PROTEIN 20-LIKE 5 540 - -
Sto8g0884 544 ProSiteProfiles Trp-Asp (WD) repeats profile. 335 376 IPR001680 GO:0005515
Sto8g0884 544 Pfam WD domain, G-beta repeat 297 325 IPR001680 GO:0005515
Sto8g0884 544 Pfam WD domain, G-beta repeat 342 367 IPR001680 GO:0005515
Sto8g0884 544 SMART WD40_4 286 325 IPR001680 GO:0005515
Sto8g0884 544 SMART WD40_4 328 367 IPR001680 GO:0005515
Sto8g0884 544 SMART WD40_4 211 257 IPR001680 GO:0005515
Sto8g0884 544 SMART WD40_4 370 422 IPR001680 GO:0005515
Sto8g0884 544 SMART WD40_4 471 508 IPR001680 GO:0005515
Sto8g0884 544 Gene3D - 11 513 IPR015943 GO:0005515
Sto8g0884 544 ProSiteProfiles Trp-Asp (WD) repeats profile. 300 325 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g0884 Sto-Chr8 5600400 5604552 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g0884 302 429 Miscellaneous Gene Families AT5G08390 23.438 3.43e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g0884 K24741 - gmx:100782580 951.044
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0884 8 5600400 5604552 Sto8g0884 8 5600400 5604552 ECH