Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g0769 TTGAAGCTTACCGACATCCTATTAATGGAGAATTCATCTGATGTACTTGGCTCTAAAGGCTTGATTAAAAAACATGAATTTGTGAGGATTATAATTCAGTGCCTATATGCATTAGGGTACAGTAAGTCTGCCTCttgtttggaattggaatctGGTATTTCATTCAAGTCTACTGAATTTCAGTTGCTTGAGTCACAGATACTTAATGGGAATTGGGATGGTTGCATCAGcactattaaacttttaaagGATATGATGGATGAAACTAGAGAATCCGCTCTGTTTCTTGTCTTCAGACAATGCCTTCTGGAGTATTTGAGTTGTGGCCAGGATACTTTAGCTCTAGATGTATTAAGAAGACAAATTTCTTCACTACATGTGGACAAATGCAAGGTTCACAGCCTGGCTAATAGCATGCTTTCCTTGAAGGATATGGAGTTAGGCTTAACAGATGGTACCATTGTTCATGATTTGCGAAGGAATttgttaaatgatttggaaAAATTGCTCCCTCCTCCAATTACAGTACCTGAAAGAAGACTGGAAAATTTAGTAGAAACTACTGTTACTGCCTGGATTGATTCTTGTATGTATCACAGTTCATCAAATCCAGTTTCACTTTATGAAGATCATTGTTGTGGTCGGAATCACATTCCTACTGAAACCACTCAGATCTTGACTGGGCATAGGAATGAAGTTTGGTTTGTGCAGTTTTCTAATAATGGGGATTACCTGGCCTCTTCATCTAATGATTGTACAGCCATCATATGGAAGGTGCTGGAAGATGGGAAACTGACGCTGAAACACACTTTACAAGGTCACAAAAATCCTGTATCTTTTGTGGCATGGAGTCCTGATGACACCAAGTTGCTCACGTGTGGGAACTCTGAAGTATTGAAGCTGTGGGATGTTGAAACAGGTACTTGCAAGCACACATTTGGGAGTCATGGCTTCGTTGTCAGCTCATGTGCCTGGTTTCCCAACTCAAAGCATATTGTGTGTGGCAGTTCTGACCCTGAAAAGGGCATCTGCATGTGGGATTGTGATGGGAACGAGCTAAAAGCTTGGAGAGGAGGGAGGATGCCTAAAGTTCTAGATCTTTCCATTACACCAGATGGGGAGTACCTGATCACCATATTCATGGATAAAGAAATTCGGATTTTGCACTTGGGAACAAATGCAGAGCGAGTCATCTCAGAGGAGCACCCAATCACATCCCTTTCAGTTTCAGGAGATAGCAAGTTCTTCATCGTCAATCTCAACAGCCAGGAGATTCATATGTGGGATGTGGGTGGAAAATGGGATAAGCCATTGAGGTATAATGGCCACAAGCAACACAAATATGTGATAAGATCATGCTTCGGTGGATTGAATAGCACATTCATTGCCAGTGGTAGCGAGAATTCACAGGTGTACATTTGGAACCGCAGGAACTCACAACCAATAGAAGTTTTATCTGGGCATTCAATGACTGTGAATTGTGTGAGCTGGAACCCTAGAAGACCACAAATGTTGGCATCAGCAAGTGATGATTATACAATCCGTATATGGGGACCCAGCTTATcagaaaaagaatga 1578 0.4018 LKLTDILLMENSSDVLGSKGLIKKHEFVRIIIQCLYALGYSKSASCLELESGISFKSTEFQLLESQILNGNWDGCISTIKLLKDMMDETRESALFLVFRQCLLEYLSCGQDTLALDVLRRQISSLHVDKCKVHSLANSMLSLKDMELGLTDGTIVHDLRRNLLNDLEKLLPPPITVPERRLENLVETTVTAWIDSCMYHSSSNPVSLYEDHCCGRNHIPTETTQILTGHRNEVWFVQFSNNGDYLASSSNDCTAIIWKVLEDGKLTLKHTLQGHKNPVSFVAWSPDDTKLLTCGNSEVLKLWDVETGTCKHTFGSHGFVVSSCAWFPNSKHIVCGSSDPEKGICMWDCDGNELKAWRGGRMPKVLDLSITPDGEYLITIFMDKEIRILHLGTNAERVISEEHPITSLSVSGDSKFFIVNLNSQEIHMWDVGGKWDKPLRYNGHKQHKYVIRSCFGGLNSTFIASGSENSQVYIWNRRNSQPIEVLSGHSMTVNCVSWNPRRPQMLASASDDYTIRIWGPSLSEKE 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g0769 525 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 485 525 - -
Sto8g0769 525 ProSiteProfiles LIS1 homology (LisH) motif profile. 23 55 IPR006594 GO:0005515
Sto8g0769 525 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 226 259 - -
Sto8g0769 525 SMART ctlh 56 113 IPR006595 -
Sto8g0769 525 Gene3D - 215 519 IPR015943 GO:0005515
Sto8g0769 525 ProSiteProfiles Trp-Asp (WD) repeats profile. 226 259 IPR001680 GO:0005515
Sto8g0769 525 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 56 113 IPR006595 -
Sto8g0769 525 SUPERFAMILY WD40 repeat-like 216 517 IPR036322 GO:0005515
Sto8g0769 525 CDD WD40 223 517 - -
Sto8g0769 525 SMART Lish 23 55 IPR006594 GO:0005515
Sto8g0769 525 SMART WD40_4 391 429 IPR001680 GO:0005515
Sto8g0769 525 SMART WD40_4 219 258 IPR001680 GO:0005515
Sto8g0769 525 SMART WD40_4 478 518 IPR001680 GO:0005515
Sto8g0769 525 SMART WD40_4 306 347 IPR001680 GO:0005515
Sto8g0769 525 SMART WD40_4 349 389 IPR001680 GO:0005515
Sto8g0769 525 SMART WD40_4 264 303 IPR001680 GO:0005515
Sto8g0769 525 SMART WD40_4 433 475 IPR001680 GO:0005515
Sto8g0769 525 ProSiteProfiles Trp-Asp (WD) repeats profile. 271 312 IPR001680 GO:0005515
Sto8g0769 525 ProSiteProfiles Trp-Asp (WD) repeats profile. 485 517 IPR001680 GO:0005515
Sto8g0769 525 PANTHER WD REPEAT PROTEIN 26-RELATED 11 520 - -
Sto8g0769 525 Pfam WD domain, G-beta repeat 267 303 IPR001680 GO:0005515
Sto8g0769 525 Pfam WD domain, G-beta repeat 440 475 IPR001680 GO:0005515
Sto8g0769 525 Pfam WD domain, G-beta repeat 480 517 IPR001680 GO:0005515
Sto8g0769 525 Pfam WD domain, G-beta repeat 307 346 IPR001680 GO:0005515
Sto8g0769 525 Pfam WD domain, G-beta repeat 222 258 IPR001680 GO:0005515
Sto8g0769 525 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 271 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g0769 Sto-Chr8 4839412 4844052 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g0769 220 377 Miscellaneous Gene Families AT5G08390 30.380 4.81e-16 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g0769 K22382 - gmx:100818922 883.634
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0769 8 4839412 4844052 Sto8g0769 8 4839412 4844052 ECH