Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g0549 ATGAAGCGGGTTTGGAAACTCTTCGACGCAGCACAAGCAGAGTTCCACAGGAACTCTGCTAAACCTACTCTCCTTACACACTTTCCTTTATCCCTCAAAACCTCCACAGTTTATAGATGCACCCGCCAAATCACTACCCACGATCACTCACCCCGCCCTTTCTTGATTCGAGATGCCATTGCCTCTGCCTCATACACCACTCGCCAAGTCAATCACTCCTTCGAGACTTCCCCCATTCGAGATATTATTGGCTTGTTCTCATGCACCCCCGATTACTATCATTTACTAGCCCGTCAGAATATGAGCCGGAAAGTTTCGATTGTTAGGGACGAATTGGTTCGGGTAGCCCAGGACTCTGATAGGGTTCTCGAAATTTTGGAAGACAATTCTGGCTCTTTGTTTTGGAAATATCCTGATGGGTTCGCATTTGCTGAGCTTTTGGATCAGTTGGAACACTGGCCTGATTTGGTTCTAATGGTTTTAAATTGGAGAAGAAAGAACTCTCTTAGGGGTACTCCTATGGCTCTTCCAGAGTACTCTAAGTGTATCAAAGTTGCTGGTAGATTTAGAAATATTGATCTTGCAGTTGAACTCTTTAATGAAGCTGCAAACAAGCTACTTACAAGAACAGCTACTTATAATGCACTGATGAGTGCTTATATGTACAATGGTCTTACTGACAAATGCTTTTTACTATATCGGCGGATTAAAATGGATGCAACTTCTAGCCCTAATATTGTAACATACAACATTCTTATTTCTTGTTATAGCCGCTTGATGCTAGTAAAGCAAATGGAAGTAATATTTGCGGAGATAAGTAAGCTAAACCTCTCCCCGAATATAAACACTTATAATTATATGATTTCTGGATATGTTACAGCCTGGAACTGGAATAAAATGGAGCAGACATTTCAAATGCTGAAGTCAAGTCCAGTTAGGCCTGACACCAACACATACCTGCTAATGCTTCGAGGGTATGCTCTTTCAGGTAATCTGGAGAAGATGGAAGAGACATATCTGTTAGTAAGGGATCATGTTAATGAGAAGAAATCTTCTTTGATCAGGTGCATGATATGTGCATATTGTGGAAGTTCTTCGCCTGATAGAGTCAAGAAGATAGAGGAATTACTGAAGTTGATTCCAGAAAGGAGTTACAGGCCATGGTTAACTACGTTGTTAATTAAGTTTTATGCTAAAGAGGACATGTTAGAAGAAATGGAGAATGCAATTAATGAAGCATTTGAGCACAAAGTCACAGTAAAATCATTAGCTATATTGCGAAGCATCCTTGCAACTTATTTTAGGAAAAATTTATTGGACAGGTTAGAAAATTTTGTGAGGAATGCTGAAGATTTTGACTGGAAACTTTGCCGCTCCATGTATCATTGTAAGATGATCATGTACGGATCACAAAATTTCCTAAAGGAAATGGAAAGCGTCCCGAATGAGATGGAAAATGTGAACATTAGATCAACCAAGAAAACTTTGTTGATTATGTACAAAGCTTACGTGAGCTGTGGCCAAAGATCCAAGGTTGAGAAGATATTGGGACTAATGTGCAAGCATGGATATGAATTTCCCGATGGTTCCGGCCTTTTATTTATCAAGACTCTGGTGATTAGTGTTATAGAGATTGGACagGACTGTTGCTCTAGTTTTTTCATTATCGGCTGGTATGATTTATTGACATTAGTTATTGCAGATGGTGCTGTACGTGCGCAGTCTTTGGCAGGTCAAAGCACTAGAAATGCTGAGTGCTTATCGCTTGCAGAATCCTAA 1779 0.3997 MKRVWKLFDAAQAEFHRNSAKPTLLTHFPLSLKTSTVYRCTRQITTHDHSPRPFLIRDAIASASYTTRQVNHSFETSPIRDIIGLFSCTPDYYHLLARQNMSRKVSIVRDELVRVAQDSDRVLEILEDNSGSLFWKYPDGFAFAELLDQLEHWPDLVLMVLNWRRKNSLRGTPMALPEYSKCIKVAGRFRNIDLAVELFNEAANKLLTRTATYNALMSAYMYNGLTDKCFLLYRRIKMDATSSPNIVTYNILISCYSRLMLVKQMEVIFAEISKLNLSPNINTYNYMISGYVTAWNWNKMEQTFQMLKSSPVRPDTNTYLLMLRGYALSGNLEKMEETYLLVRDHVNEKKSSLIRCMICAYCGSSSPDRVKKIEELLKLIPERSYRPWLTTLLIKFYAKEDMLEEMENAINEAFEHKVTVKSLAILRSILATYFRKNLLDRLENFVRNAEDFDWKLCRSMYHCKMIMYGSQNFLKEMESVPNEMENVNIRSTKKTLLIMYKAYVSCGQRSKVEKILGLMCKHGYEFPDGSGLLFIKTLVISVIEIGQDCCSSFFIIGWYDLLTLVIADGAVRAQSLAGQSTRNAECLSLAES 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g0549 592 TIGRFAM PPR: pentatricopeptide repeat domain 283 316 IPR002885 -
Sto8g0549 592 TIGRFAM PPR: pentatricopeptide repeat domain 212 237 IPR002885 -
Sto8g0549 592 TIGRFAM PPR: pentatricopeptide repeat domain 247 281 IPR002885 -
Sto8g0549 592 Pfam PPR repeat family 244 292 IPR002885 -
Sto8g0549 592 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 245 279 IPR002885 -
Sto8g0549 592 PANTHER EXPRESSED PROTEIN 50 528 IPR044179 GO:0003729
Sto8g0549 592 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 280 314 IPR002885 -
Sto8g0549 592 PANTHER OS05G0407900 PROTEIN 50 528 - -
Sto8g0549 592 Pfam PPR repeat 318 339 IPR002885 -
Sto8g0549 592 Pfam PPR repeat 212 237 IPR002885 -
Sto8g0549 592 Gene3D Tetratricopeptide repeat domain 374 537 IPR011990 GO:0005515
Sto8g0549 592 Gene3D Tetratricopeptide repeat domain 177 372 IPR011990 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g0549 195 418 Miscellaneous Gene Families AT4G11690 20.992 3.53e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g0549 - - csin:114262612 543.888
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0549 8 3384732 3387288 Sto8g0549 8 3384732 3387288 ECH