Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g0540 ATGGCTTCTCCTGGGGGCTACGAGGGTGAAACCCGTATACAACTTTTGTATACGTTGCGAGATGATTTATTAGCGGCTGAAAATGCCCCAAATCAGTTTGAAACTGACTCTTCCATTTTAACGTATGAGAGAGCGTCACCTATTTCAAGTCCCAAGTGGAATCAGTCTGACGTAACGGCGTCAATTGAGGGACTAGACAGCCTGTCTCCTGGTGGCAAGGCATTGGGCATAGACAAAAACACCATGGAGAAACTGACGGAAGCATCTGCTGCTGAAGCAGAGGCGGCAAGCGCTGTTTGGCAAGCTATGCAGGCCGTATCAAACAATCCGACGGAAGAAATGTCTGTATCAGATGGCAGCTCACAGGCTGCAGGAACAGCTTCAGATGACAATAACACAGAAGGAGATGTTCGCCTTCATCCCCGAGCTGTTGTAGTTGCTAAAGAGGCTACAGGTAACCTGGGTGGAATGGTGAGACAGTTATCACTGGATCAATTTGAAAATGAGAGCAGACGCATGGTTCCTATCATTTCTACTTTGCTCATACCTCGGAACTGGAAAGCTCCAACAAACAGGCGGTTCTTCTTGGATTCGTATGAAGTGGGTGAGCTTTGTTATGCTGCCGAGCAGATATTTATGCATGAACCGACTGTTCTTCAGCTTAAAGCTCCTGTCAAAGTATTTGGTGATCTTCATGGACAATTTGGTGATTTGATGAGGCTATTTGATGAATATGGGTTCCCCTCAACTGAAGGAGACATAACCTGTTCAGAAAGTTTATACTTAAAATCAAGATTAATTGAGATTGAGTATCCTGACAATGTTCACTTGATACGTGGAAACCATGAAGCTGCTGACATAAATGCACTATTTGGTTTTCGTATTGAATGCATTGAAAGAATGGGAGAAAATGATGGAATTTGGGCATGGACTCGATTCAATCAACTTTTTAACTATCTTCCACTTGCTGCTcttattgaaaagaaaattatctgTATGCATGGTGGCATAGGAAGGTCTATCCATTCAGTAGAACAGATAGAGAAACTTCAAAGGCCCATATCCATGGAAGCAGGATCCATAGTTTTAATGGACCTCTTATGGTCTGATCCCACCGAGAATGACAGTGTAGAGGGTTTGAGACCTAATGCTAGAGGGCCAGGGCTTGTCACTTTTGGGCCTGACCGTGTCACAGAATTCTGTAAGAAAAATAAGTTGCAGCTTATTTTAAGGGCCCATGAATGCGTGATGGATGGTTTTGAGCGATTTGCTCAGGGACAATTAATTACTCTTTTCTCTGCAACGAACTACTGTGGAACCGCAAACAATGCTGGAGCTATACTTGTAGTTGGTAGAGGTTTGGTTGTGGTTCCAAAACTAATTCATCCCTTACCACCTCCCTTTCTGTCTCCAGAGACATCTCCTGACCGTGCCAATGAGGAGACATGGATGCAGGAGCTCAATGTTCAGAGGCCACCAACTCCTACTAGGGGTCGACCCCAGCCTGACCATGACCAAAACCAAAGAAAAGCTTTCGCAAACGCTCAAGtgttgttcatatatatatatatatatatgcatgcaattCACATGAAATTACTCGTTTTAACCCTTAAATCGCTCTATTATCCTTCTTGCCTATTCCTTCGATCTTGTAAGCTATTCTCGTCGGTTTCTTCTACCAGCCAGTTCAAATGGAACTCAACAACCAACGTGATCATCACAAACCCTATTCTTGTAATTATGGAATCTTGCTCTACCATGCGCCAATTGAAGCAGATTCAAGCACGCATGACTTGCACTGGTCTCGTTACCCACACTTTTCCGATAAGCCGGGTTTTAGCATTCTGTGCTCTAGCGGATGGCGGAGATTTACGATATGCTCATCTTTTGTTCAGCCAGATCGAGAAACCCAATACGTATATGTGGAACACTATGATCAGAGGTTATTGTAAAGCCAAAATTCCAACTGTTGCTTTCCTGTTCTTTTGCCAAATGGTTGGAGAACAAGTTGAAATGGACTGCCGGAGCTTCGTTTTCGCGCTCAAGGTGTGCGAACAGTTTGAGAGAGATTTCCAGGGGGATTCGGTGCATTGCAGAATTCGGAAAACGGGATTTGATTCTGAATTGCTTGTGCGCAATGGATTGATCCATTTCTATGCCGATCGTGGTTGTGTGAGACTTGCACGCGAACTGTTCGACGAAAGTTCTCTCAGGGATGTTGTTACTTGGACATCAATGATCGACGGGTATGCAACCCGAAATTACTCAGATGAAGCTATGAACCTTTTCAAGTTAATGTTGTCGAGTGATATCGAGCCGAATGAGGTAACATTCATTGCACTTCTCTCTGCATGCTCTCGGAAGGGTGACCTTAGCGTGGGGAAAAGCATTCATGAATGCATAAAAAAGAACATAAATTGCAGTTTGAGTTTGCACAATGCCTTGTTGGACATGTATGTGAAATGCAGTTGTTTGAAAGCAGCTAGAGAGCTATTTGACAGAATGGAAAATAGGGATGTTTTCTCATGGACTAGCTTGGTTAATGGGTATGCCAAATGTGGTGACTTGGAATCTGCAAGGAGGTTCTTTGATCTAACTCCTGAGAAGAATGTGGTCTCTTGGAATGCACTGATTGCAGGTTATTCTCAGAATAACAAACCCAAGGAAGCACTACAATTATTTCATGAGATGATTGGGGCAGGTATGATTCCAGTTGAGCCTACCTTAGTGAGTGTGCTATCTGCTTGTGGTCAAATGAGTTGCTTGAATTTGGGTCAGTGGATACATGAATATTTCATCAACCGAAGAAGAATACACCTTTCTGTTACTCTGGCAAATGCATTTATAGATATGTATGCCAAGTGTGGAAGCATAGATACGGCTGAAGAAGTTTTCAATGCAATGTCAGAGACAGAGAGAGACCTGGTTTCATGGAATTCCATGATTGCAGGATATGCCTCCAATGGTCGAGCCAAACAAGCTATCAACCTTTTTGATCAGATGATGCATAAGGGATTCAAGCCAGACGACATAACttttgtaagtttattaacagCTTGCAGTCACGGTGGTTTAGTTTCCAAAGGTCAACAATATTTTGATTCCATGGAAAGGAACTACGGAATAGAACCCAAAAGGGAACACTATGCCTGCATGATTGATTTATTTGGTCGAAATGGGCTCCTTGAAGAAGCTTACAAGTTAATAACAAATATGCCAATGAAACCATGTGAAGCAGCTTGGGGTGCCCTTCTAAATGCTTGCAAAATGCATGGCAACGTTGAACTGGCCAAATTATCTGCCTGTAATCTTTTAAGGTTGGATGCAAAGGACAGTGGAATATATGTGTTGCTGGCAAATATTTGTGCTAATGAGAGAAACTGGGGTGACGTAAAGATGGTGCGAAGTTTGATGAGAGAAAAGGGTGTCAAAAAGCTTCCTGGACGCAGCTTGGTAGAGATAGAGGGTGAGTTTATAGAGTTTTTGGTGGCCGATGAATCACACCCTCAATCTGAAGAGATTTATAAAATACTAAATCAAATATACTTCTTGTCAGATCCGGAAGACCATATATGTGAATGTGAAAGTGAGAATGAACCTTCATCAATGAACTTACAGTACTGGGATGATTGCTCCTAA 3642 0.4212 MASPGGYEGETRIQLLYTLRDDLLAAENAPNQFETDSSILTYERASPISSPKWNQSDVTASIEGLDSLSPGGKALGIDKNTMEKLTEASAAEAEAASAVWQAMQAVSNNPTEEMSVSDGSSQAAGTASDDNNTEGDVRLHPRAVVVAKEATGNLGGMVRQLSLDQFENESRRMVPIISTLLIPRNWKAPTNRRFFLDSYEVGELCYAAEQIFMHEPTVLQLKAPVKVFGDLHGQFGDLMRLFDEYGFPSTEGDITCSESLYLKSRLIEIEYPDNVHLIRGNHEAADINALFGFRIECIERMGENDGIWAWTRFNQLFNYLPLAALIEKKIICMHGGIGRSIHSVEQIEKLQRPISMEAGSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVTEFCKKNKLQLILRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHPLPPPFLSPETSPDRANEETWMQELNVQRPPTPTRGRPQPDHDQNQRKAFANAQVLFIYIYIYMHAIHMKLLVLTLKSLYYPSCLFLRSCKLFSSVSSTSQFKWNSTTNVIITNPILVIMESCSTMRQLKQIQARMTCTGLVTHTFPISRVLAFCALADGGDLRYAHLLFSQIEKPNTYMWNTMIRGYCKAKIPTVAFLFFCQMVGEQVEMDCRSFVFALKVCEQFERDFQGDSVHCRIRKTGFDSELLVRNGLIHFYADRGCVRLARELFDESSLRDVVTWTSMIDGYATRNYSDEAMNLFKLMLSSDIEPNEVTFIALLSACSRKGDLSVGKSIHECIKKNINCSLSLHNALLDMYVKCSCLKAARELFDRMENRDVFSWTSLVNGYAKCGDLESARRFFDLTPEKNVVSWNALIAGYSQNNKPKEALQLFHEMIGAGMIPVEPTLVSVLSACGQMSCLNLGQWIHEYFINRRRIHLSVTLANAFIDMYAKCGSIDTAEEVFNAMSETERDLVSWNSMIAGYASNGRAKQAINLFDQMMHKGFKPDDITFVSLLTACSHGGLVSKGQQYFDSMERNYGIEPKREHYACMIDLFGRNGLLEEAYKLITNMPMKPCEAAWGALLNACKMHGNVELAKLSACNLLRLDAKDSGIYVLLANICANERNWGDVKMVRSLMREKGVKKLPGRSLVEIEGEFIEFLVADESHPQSEEIYKILNQIYFLSDPEDHICECESENEPSSMNLQYWDDCS 1213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g0540 1213 Gene3D Tetratricopeptide repeat domain 581 706 IPR011990 GO:0005515
Sto8g0540 1213 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 975 1009 IPR002885 -
Sto8g0540 1213 Pfam E motif 1092 1154 IPR046848 -
Sto8g0540 1213 ProSitePatterns Serine/threonine specific protein phosphatases signature. 278 283 IPR006186 GO:0016787
Sto8g0540 1213 Gene3D - 179 490 IPR029052 -
Sto8g0540 1213 SUPERFAMILY Metallo-dependent phosphatases 173 473 IPR029052 -
Sto8g0540 1213 MobiDBLite consensus disorder prediction 109 138 - -
Sto8g0540 1213 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 840 870 IPR002885 -
Sto8g0540 1213 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 639 673 IPR002885 -
Sto8g0540 1213 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 871 905 IPR002885 -
Sto8g0540 1213 SMART pp2a_7 196 467 IPR006186 GO:0016787
Sto8g0540 1213 TIGRFAM PPR: pentatricopeptide repeat domain 977 1010 IPR002885 -
Sto8g0540 1213 TIGRFAM PPR: pentatricopeptide repeat domain 742 776 IPR002885 -
Sto8g0540 1213 TIGRFAM PPR: pentatricopeptide repeat domain 873 905 IPR002885 -
Sto8g0540 1213 TIGRFAM PPR: pentatricopeptide repeat domain 813 841 IPR002885 -
Sto8g0540 1213 TIGRFAM PPR: pentatricopeptide repeat domain 641 675 IPR002885 -
Sto8g0540 1213 TIGRFAM PPR: pentatricopeptide repeat domain 842 867 IPR002885 -
Sto8g0540 1213 MobiDBLite consensus disorder prediction 487 507 - -
Sto8g0540 1213 Pfam Calcineurin-like phosphoesterase 224 416 IPR004843 GO:0016787
Sto8g0540 1213 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 740 774 IPR002885 -
Sto8g0540 1213 MobiDBLite consensus disorder prediction 109 132 - -
Sto8g0540 1213 Gene3D Tetratricopeptide repeat domain 993 1160 IPR011990 GO:0005515
Sto8g0540 1213 Gene3D Tetratricopeptide repeat domain 800 936 IPR011990 GO:0005515
Sto8g0540 1213 Gene3D Tetratricopeptide repeat domain 714 799 IPR011990 GO:0005515
Sto8g0540 1213 Pfam PPR repeat family 870 917 IPR002885 -
Sto8g0540 1213 Pfam PPR repeat family 739 787 IPR002885 -
Sto8g0540 1213 Pfam PPR repeat family 975 1022 IPR002885 -
Sto8g0540 1213 Pfam PPR repeat 641 669 IPR002885 -
Sto8g0540 1213 Pfam PPR repeat 1050 1075 IPR002885 -
Sto8g0540 1213 Pfam PPR repeat 813 840 IPR002885 -
Sto8g0540 1213 Pfam PPR repeat 947 970 IPR002885 -
Sto8g0540 1213 Pfam PPR repeat 842 869 IPR002885 -
Sto8g0540 1213 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 18 508 - -
Sto8g0540 1213 SUPERFAMILY TPR-like 700 866 IPR011990 GO:0005515
Sto8g0540 1213 PRINTS Serine/threonine phosphatase family signature 224 251 IPR006186 GO:0016787
Sto8g0540 1213 PRINTS Serine/threonine phosphatase family signature 315 341 IPR006186 GO:0016787
Sto8g0540 1213 PRINTS Serine/threonine phosphatase family signature 345 372 IPR006186 GO:0016787
Sto8g0540 1213 PRINTS Serine/threonine phosphatase family signature 405 425 IPR006186 GO:0016787
Sto8g0540 1213 PRINTS Serine/threonine phosphatase family signature 427 443 IPR006186 GO:0016787
Sto8g0540 1213 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE BSL3 18 508 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g0540 Sto-Chr8 3339419 3346956 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g0540 581 985 Glycoside Hydrolase AT3G49170 24.757 9.86e-29 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g0540 - - ccaj:109796361 961.059
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0540 8 3339419 3346956 Sto8g0540 8 3339419 3346956 ECH