Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g0501 ATGGCTGTGGTTGCCGTTGCTCTGCACCACCACTTGCTCCGCTTCTCCAAATGGAAGACGATGACTGCAACGACGCCGCATAGGTCCATTCTTTTACGGTCGCAAAAGAAGCTTCGATTTTCACtcctttcttgttcttcttcctcttctactTCCCAGACCCCAGAAGCTAATGCTCCTCAAACCCCAGAATACTACGTCAATTCGGGTCTCCAGCTCTTCTCCAAAGGACGAGTTAAAGATGCTTTGGTCCAGTTTGAAACGGCTCTTTCTTTGGACCCCAATCCTATGGAGGCCCAAGCTGCCCTCTATAACAAAGCTTGCTGCCATGCATATCGAGGGGAAGGAAAGAAAGCTGCTGATTGTCTCCGCACTGCTCTGAAGGAGTACAACCTAAAATTTGGTACCATTCTCAATGATCCAGACTTGGCCTCTTTTAGAGCTTCGCCGGAATTCAAAGAACTGCAGGAAGAGGCAAGGCTGGGTGGTGAAGATATTGGCTACAGTTTTCGGAGAGATCTAAAACTTATTAGTGAAGTTCAAGCACCATTTCGTGGGATTAGGAGATTCTTCTATATAGCATTTACTGCAGCTGCAGGAATTTCAACGCTATTTACAGTGCCCAGGCTATTTCGTGCAATTAAAGGTGGTGATGATGCTCCTGATCTATGGGAAACTTCTGGGAATGTTGCCATTAACATTGGAGGTATCATTGTTCTTGTGGCATTATTCCTTTGGGATAACAAAAAAGAGGAGGAACAGCTTGCACAGATATCCAGAAATGAGACACTATCAAGGTTGCCTTTGCGCCTGTCAACTAATCGCATAGTTGAACTCGTGCAGCTACGGGACACTGTTAGGCCAGTTATATTAGCAGGGAAAAGAGAAACAGTATCTTTGGCTTTACAAAGTGCTGAGAGGTTTCGCACTGAGCTCCTTAGACGTGGTGTTCTGTTAATTCCTGTCATCTGGGGAGAGGGTAGGGAAACAAAAATTGAGAAGAAAGGTTTTGGTTCTCCAGAAAAGGCTGCTGCAGCCCTTCCATCCATTGGGGAAGATTTTGATAAGCGAACACAATCCATAGTTGCAAAATCAAAGTTGAAAGCTGAAATCAGATTCAAGGCTGAGGTTGTATCACCAGCAGAATGGGAAAGATGGATAAGGGAGCAGCAGAAGTCTGAAGGAGTTACTCCTGGTGAAGACGTCTACATTATACTGCGCTTAGATGGGCGGGTTCGAAGATCTGGGAAGGGTATGCCTGACTGGCAGCAAATTGTGAATGAGTTGCCACCAATGGAAGCACTGCTAAGCAAGCTAGAAAGATGA 1326 0.448 MAVVAVALHHHLLRFSKWKTMTATTPHRSILLRSQKKLRFSLLSCSSSSSTSQTPEANAPQTPEYYVNSGLQLFSKGRVKDALVQFETALSLDPNPMEAQAALYNKACCHAYRGEGKKAADCLRTALKEYNLKFGTILNDPDLASFRASPEFKELQEEARLGGEDIGYSFRRDLKLISEVQAPFRGIRRFFYIAFTAAAGISTLFTVPRLFRAIKGGDDAPDLWETSGNVAINIGGIIVLVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKRETVSLALQSAERFRTELLRRGVLLIPVIWGEGRETKIEKKGFGSPEKAAAALPSIGEDFDKRTQSIVAKSKLKAEIRFKAEVVSPAEWERWIREQQKSEGVTPGEDVYIILRLDGRVRRSGKGMPDWQQIVNELPPMEALLSKLER 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g0501 441 ProSiteProfiles TPR repeat profile. 63 96 IPR019734 GO:0005515
Sto8g0501 441 PANTHER PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC 10 441 - -
Sto8g0501 441 SUPERFAMILY TPR-like 59 129 IPR011990 GO:0005515
Sto8g0501 441 Pfam Low psii accumulation1 / Rep27 171 248 IPR021883 -
Sto8g0501 441 PANTHER PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC 10 441 - -
Sto8g0501 441 SMART tpr_5 63 96 IPR019734 GO:0005515
Sto8g0501 441 SMART tpr_5 100 133 IPR019734 GO:0005515
Sto8g0501 441 Gene3D Tetratricopeptide repeat domain 59 148 IPR011990 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g0501 - - qsu:112033578 698.353
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0501 8 3080591 3083653 Sto8g0501 8 3080591 3083653 ECH