Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g0313 TTGCCATTCCAGGCATTGTCTTATTTTAAGCAAATGAGGAGCACAGGTATATATCCTAACCAATTTACCTTCTCAGCGATTTTGCCTGCTTGTGCCGATACAATGGTTGTTACTTATGGTGAACAAATGCATGGTTTGATTTGGAAACATGGGTTTCAAGCGGATACATTTGTAGCTAGTGCGTTGCTTGACATAGAGGTTCTCAGGGAGAGTTCGCTTAATCCAGATCAAGTGAGCTTTTCAAGTGTCTTGAGTGCTTGTGCTAATACAGCAAAATTACATTTCGGGAAACAAGTGCACGGTAATGTTATTAAGCGTGGTTTGATAACATTGGTTTATGTGAAGAACTCGCTACTGGACATGTACTCCAAATGCAGGTCGTTTGATGATGCAATGAAGCTGTTCTATATTACCGGAGATAGAGACGTTGTCACCTGGAATGTGATGATCATGGGATGTGTCCACAATGACAACTTTGAAGCAGCTTGCAGTTATTTCCAGGCCATGAAAAGAGAAGGCTTATCTCCTGATGAGGTTTCATACTCTTCCGTTCTTCATGCTTCTGCAAGTCTTGCAGCATTGACTCAGGGCACTTCGATACATGCCCAGATCTTAAAAACTGGGTTCATGAAAAACGCATGTGTTATGAGTTCAATGATAACGATGTATGGAAAATGTGGGAACTTGTTTGATGCTTATCAGGTCTTTGAAGAAACTGAGGATCATAATGTGGTTTGTTGGACAGCTACGATAGCAGTTTTCCAACAACATGGCTGTGCAAATGAAGCGATTGAGTTATTTGAGAAGATGCTGAAACAGGGAATTGTGCCAGAATATATTACTTTTGTTTCGGTGCTGTCAGCTTGCAGCCATACTGGACAGGTTGAAGATGGATTTAAGTACTTCAATTCCATGTCTAACATACATAATATTAAACCTGGGCCTGAACATCATGCTTGCATGGTTGACTTACTTGCCCGTGTTGGTCGATTGGACGAAGCAAAGAACTATATAGAATCAATGCCAATCAAGCCTGACTCGTCAATTTGGGGGGCTCTGCTTGGGGCATGCAGAAAGTATGGCAATGTTGAAATGGGCCGAGAGGTTGCAGAGAAGCTTTTTGAGTTGGAACCAGATAATCCCGGAAATTATGTGCTGCTTTCTAATATCTATACACGTCACGGGATGCTGAAGAAAGCTGAAGAGGTTAGGCAATTAATGGGGATCAACAAAGTAAGGAAAGAGACTGGATGCAGCTGGATGGAGGTCAAGAACAAGACATTTGTATTTACTGCCAACGATAAGTCACATTCAAGGACAAATGAGATTTATGAAATGTTGCGAAAATTGAAAGAGCTGGTAAAGAAGAGAGGATATGTGGCTGAGATCCAGTTTGCAACTAACAGTGTGGAAGGGTCTGAAGAGCAGAGCTTGTGGTGTCACAGCGAGAAACTAGCTCTTGCATTTGGTCTTCTGGTCCTCCCATCTGGGTCTCCAATAACAATAAAGAAGAATTTGAGAACTTGCGGTGATTGTCATACTGTTATGAAGTTTGCTTCTGAGATTTTTGAGAGAGTGATCATTGTAAGAGATATAAACAGGTTTCACCGATTCACAAATGGTTTGTGCTCTTGTAGAGATTATTGGTGA 1650 0.4139 LPFQALSYFKQMRSTGIYPNQFTFSAILPACADTMVVTYGEQMHGLIWKHGFQADTFVASALLDIEVLRESSLNPDQVSFSSVLSACANTAKLHFGKQVHGNVIKRGLITLVYVKNSLLDMYSKCRSFDDAMKLFYITGDRDVVTWNVMIMGCVHNDNFEAACSYFQAMKREGLSPDEVSYSSVLHASASLAALTQGTSIHAQILKTGFMKNACVMSSMITMYGKCGNLFDAYQVFEETEDHNVVCWTATIAVFQQHGCANEAIELFEKMLKQGIVPEYITFVSVLSACSHTGQVEDGFKYFNSMSNIHNIKPGPEHHACMVDLLARVGRLDEAKNYIESMPIKPDSSIWGALLGACRKYGNVEMGREVAEKLFELEPDNPGNYVLLSNIYTRHGMLKKAEEVRQLMGINKVRKETGCSWMEVKNKTFVFTANDKSHSRTNEIYEMLRKLKELVKKRGYVAEIQFATNSVEGSEEQSLWCHSEKLALAFGLLVLPSGSPITIKKNLRTCGDCHTVMKFASEIFERVIIVRDINRFHRFTNGLCSCRDYW 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g0313 549 Gene3D Tetratricopeptide repeat domain 307 489 IPR011990 GO:0005515
Sto8g0313 549 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 243 277 IPR002885 -
Sto8g0313 549 PANTHER OS07G0578800 PROTEIN-RELATED 2 65 IPR045215 GO:0003723|GO:0009451
Sto8g0313 549 Pfam DYW family of nucleic acid deaminases 458 549 IPR032867 GO:0008270
Sto8g0313 549 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 142 176 IPR002885 -
Sto8g0313 549 Gene3D Tetratricopeptide repeat domain 67 191 IPR011990 GO:0005515
Sto8g0313 549 Gene3D Tetratricopeptide repeat domain 2 66 IPR011990 GO:0005515
Sto8g0313 549 Gene3D Tetratricopeptide repeat domain 192 306 IPR011990 GO:0005515
Sto8g0313 549 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 66 542 - -
Sto8g0313 549 SUPERFAMILY TPR-like 207 403 IPR011990 GO:0005515
Sto8g0313 549 Pfam PPR repeat 216 242 IPR002885 -
Sto8g0313 549 Pfam PPR repeat 116 135 IPR002885 -
Sto8g0313 549 Pfam PPR repeat family 243 290 IPR002885 -
Sto8g0313 549 Pfam PPR repeat family 141 187 IPR002885 -
Sto8g0313 549 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 2 65 - -
Sto8g0313 549 PANTHER OS07G0578800 PROTEIN-RELATED 66 542 IPR045215 GO:0003723|GO:0009451
Sto8g0313 549 Pfam E motif 360 422 IPR046848 -
Sto8g0313 549 TIGRFAM PPR: pentatricopeptide repeat domain 144 178 IPR002885 -
Sto8g0313 549 TIGRFAM PPR: pentatricopeptide repeat domain 245 277 IPR002885 -
Sto8g0313 549 TIGRFAM PPR: pentatricopeptide repeat domain 280 306 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g0313 Sto-Chr8 2008126 2009913 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g0313 1 549 Glycoside Hydrolase AT3G49170 34.603 3.57e-133 406
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g0313 - - lja:Lj1g3v4807720.1 865.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0313 8 2008126 2009913 Sto8g0313 8 2008126 2009913 ECH