Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto7g0270 ATGACAACCAGAAGCTTCTTTGCAAAGCTGAAGAGATCCGTGAATTTTACAACGCAGTTGTTACTTTCAAGATCATTCTGCTCTGGTATCCATGCCTCTCGCAGAACAAACCTCGCTTCTAGAATCATTCCTCTCGGCAAACCTTCCATCAGTTTACTCCCTGTTCTTGATCTCTGGTTCCAAGAAGGTAAAGCTGTCAATTCCGACGAGCTCCGGAGCATCGTCAAAGACCTCCGTGATCATAAACGCTACGCCCAAGCACTCCAGCTAGAGTCTGTCTATGTTATGCAATGGAATATTGAGCTTACAAGAAAGTTGAACAGTGTGGTTTTCACTCAATCTGCTAATGATCAGTGTTTGTTTACAAAGACTAGTGACGACATTTTGATGACCAGTGGTTACATTAAGATCATTGATTGGGTGAAGGGTTTCTTGGATGCAACCTTCACTATTAAGAACTTAGGTGCTAAGCCTATAGGAACTCCCATGGTGAAAACTGACAGAGTTCTTGGCTGCAATAGAGTAAAGTTGAAGAACCCAGAACAGCACAGAAGACTAATTGGTAGATTACTTCATTTAGGCTTCACAAGACCTGACATAACATATGCTACTCATCAACTTTGTCATTTTGTACAAGAGCCTACTGAAGATCATTGGCAAGCAGATTTGTATATGGTTTCTGAGTGGATGAGGAGCAAGGGTCTATGCCCATTTTCTCCAGGTGACCAAGCTGTGCAACTAGATCTTATTGGTAGAGTACGAGGCCTGAATTTTGCAGAGAGTTACTTTCAAGATCTGAGTGACAAAGACAAAAGTGAGAAGCAATATGGCGCTCTTTTAAAGTGTTATGTCAGGGAAGGCTTACTTGATAAGTCACTCTCCCTCATGCATAAGATGAAAGAGTTAGGTTATGCTTCTGCTCTGGACTACAATAATATAATGTGCCTCTATATGCGCACAGATCAACATGAGAAAGTCCCTAAAGTTTTTGCACAAATGAAAGAGGATGGTGTGTCCCCAAACAGGTTTAGCTACTGGATTTGCCTAAGCTCTTACGGTGCCAGATCTGACCTTGCGAGTATGGAGAAGTTATTGGAAGAAATGGAAAGGCGAAGCTACAATAACAAAGACTGGAACTGGAACTGGAACACATATTCTTTGGTGGCCAACATCTACATAAAAGCAGGTGAGAAGGAGAAAGCTCTGATTAACTTGAAGAATTGTGAGCATAAGGCAGGCTCCGATGCACTTGCCTACAATCATTTGATTTCACAGTATGCATGTCTTGGGAACAAAAACGCAGTGATGAGAGTCTGGAAACTTCAAAAAGACATGTGTAAAAGTCCAGTTAATAGGGATTACAAGAACATTCTGCGTTCTCTTTTGAAGCTAGGGGATTTCGAGGAAACTAAAAGATTAGTTGAGGAGTGGGAGTCATCAGGTAACATTTATGATTTCAGAGTGCCAAACATCCTCTTGGTTGCGTATTCTCGGAAGGGAATGATTGAAAAGGCTGAAACAATGCTTCGAAGTATGGTTGATAAAGGAAAGACTCCAACTCCGAATAGTTGGGCTATTATAGCATATGGATGTGTAGCGAAGCAGGAGATGGAGAAGGCCTTCCAGTGCATGAATGAAGCTGTGGCTGTAAGAGCTCAGAGTGAAAGTTGGAGGCCAAACAAAGACATCATTTCCAGCATATTGAGCTGGATCAGTGATAATAAAGATATGGATGAAGTGGAAGAGTTTGTAAATTCATTAAAAACTGTGACTTCCATGACCAGGGACATTTATCTTTCCTTGATCAAGGTGTATGTTAGATGTGGGAAGGAAGTAGATGGGATTTTAGAGAGTATGAAAGCTGATGATATAGTGCTCGATGAAGATGTAAAGAACATCCTTGCCTCAAAAGAGCTGTAA 1920 0.4135 MTTRSFFAKLKRSVNFTTQLLLSRSFCSGIHASRRTNLASRIIPLGKPSISLLPVLDLWFQEGKAVNSDELRSIVKDLRDHKRYAQALQLESVYVMQWNIELTRKLNSVVFTQSANDQCLFTKTSDDILMTSGYIKIIDWVKGFLDATFTIKNLGAKPIGTPMVKTDRVLGCNRVKLKNPEQHRRLIGRLLHLGFTRPDITYATHQLCHFVQEPTEDHWQADLYMVSEWMRSKGLCPFSPGDQAVQLDLIGRVRGLNFAESYFQDLSDKDKSEKQYGALLKCYVREGLLDKSLSLMHKMKELGYASALDYNNIMCLYMRTDQHEKVPKVFAQMKEDGVSPNRFSYWICLSSYGARSDLASMEKLLEEMERRSYNNKDWNWNWNTYSLVANIYIKAGEKEKALINLKNCEHKAGSDALAYNHLISQYACLGNKNAVMRVWKLQKDMCKSPVNRDYKNILRSLLKLGDFEETKRLVEEWESSGNIYDFRVPNILLVAYSRKGMIEKAETMLRSMVDKGKTPTPNSWAIIAYGCVAKQEMEKAFQCMNEAVAVRAQSESWRPNKDIISSILSWISDNKDMDEVEEFVNSLKTVTSMTRDIYLSLIKVYVRCGKEVDGILESMKADDIVLDEDVKNILASKEL 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto7g0270 639 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 225 637 - -
Sto7g0270 639 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 19 92 - -
Sto7g0270 639 Pfam PPR repeat 276 303 IPR002885 -
Sto7g0270 639 Pfam PPR repeat 490 516 IPR002885 -
Sto7g0270 639 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 272 306 IPR002885 -
Sto7g0270 639 PANTHER OS12G0527900 PROTEIN 19 92 - -
Sto7g0270 639 PANTHER OS12G0527900 PROTEIN 225 637 - -
Sto7g0270 639 Pfam PPR repeat family 310 351 IPR002885 -
Sto7g0270 639 TIGRFAM PPR: pentatricopeptide repeat domain 310 341 IPR002885 -
Sto7g0270 639 TIGRFAM PPR: pentatricopeptide repeat domain 490 520 IPR002885 -
Sto7g0270 639 TIGRFAM PPR: pentatricopeptide repeat domain 276 303 IPR002885 -
Sto7g0270 639 Gene3D Tetratricopeptide repeat domain 407 637 IPR011990 GO:0005515
Sto7g0270 639 SUPERFAMILY TPR-like 388 551 IPR011990 GO:0005515
Sto7g0270 639 Gene3D Tetratricopeptide repeat domain 212 395 IPR011990 GO:0005515
Sto7g0270 639 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 485 519 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto7g0270 Sto-Chr7 1898155 1902218 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto7g0270 206 604 EF-hand Containing Proteins AT1G02150 33.085 1.19e-65 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto7g0270 - - adu:107483733 562.762
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto7g0270 7 1898155 1902218 Sto7g0270 7 1898155 1902218 ECH