Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto7g0163 ATGGCTGGCTATAAGGCTGACGACGACTACGATTACCTCTTCAAGGTTGTCTTGATTGGCGATTCTGGTGTGGGCAAGTCCAATCTTCTCTCCAGGTTCACCAAGAACGAGTTCAACCTCGAGTCCAAGTCTACCATTGGTGTCGAATTCGCTACTCGCACCTTGAACGTTGATGCTAAAGTAATTAAGGCTCAGATCTGGGATACTGCGGTTAATCATTATAGGTACCGTGCCATCACCAGTGCTTACTACCGCGGGGCAGTAGGTGCACTTCTTGTGTACGATGTCACTCGCCATGCCACATTCGAGAACGTAGACAGGTGGCTGAAAGAATTGCGAAACCACACAGATTCAAACATTGTTGTGATGCTTGTTGGGAACAAATCAGATCTTCGTCACCTTGTAGCCGTATCCACGGAAGATGGGAAATCTTATGCTGAGAAGGAATCACTATACTTCATGGAAACCTCAGCTCTGGAGGCAACCAATGTGGAAAATGCATTCGCGGAAGTTCTGACTCAAATCTACCACATCGTCAGCAAGAAGGCAGTGGAGGGTGGAGAAAATGGAACTGCATCACTGCCAGCCAAAGGAGAGAAAATAGATGTAAAAAATGATGTCTCTGCATTGAAAAGAGTTGGTTGCTGCTCAAGCTAG 657 0.4658 MAGYKADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLNVDAKVIKAQIWDTAVNHYRYRAITSAYYRGAVGALLVYDVTRHATFENVDRWLKELRNHTDSNIVVMLVGNKSDLRHLVAVSTEDGKSYAEKESLYFMETSALEATNVENAFAEVLTQIYHIVSKKAVEGGENGTASLPAKGEKIDVKNDVSALKRVGCCSS 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto7g0163 218 ProSiteProfiles small GTPase Rho family profile. 7 179 - -
Sto7g0163 218 Gene3D - 6 216 IPR027417 -
Sto7g0163 218 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 181 IPR027417 -
Sto7g0163 218 PRINTS Transforming protein P21 ras signature 14 35 - -
Sto7g0163 218 PRINTS Transforming protein P21 ras signature 37 53 - -
Sto7g0163 218 PRINTS Transforming protein P21 ras signature 55 77 - -
Sto7g0163 218 PRINTS Transforming protein P21 ras signature 118 131 - -
Sto7g0163 218 PRINTS Transforming protein P21 ras signature 153 175 - -
Sto7g0163 218 ProSiteProfiles small GTPase Ras family profile. 1 218 IPR001806 GO:0003924|GO:0005525
Sto7g0163 218 SMART rab_sub_5 14 178 - -
Sto7g0163 218 Pfam Ras family 15 176 IPR001806 GO:0003924|GO:0005525
Sto7g0163 218 CDD Rab11_like 11 176 - -
Sto7g0163 218 SMART rho_sub_3 16 174 IPR001806 GO:0003924|GO:0005525
Sto7g0163 218 ProSiteProfiles small GTPase Rab1 family profile. 9 216 - -
Sto7g0163 218 PANTHER RAS-RELATED PROTEIN RABA1B 1 218 - -
Sto7g0163 218 PANTHER DRAB5-RELATED 1 218 - -
Sto7g0163 218 SMART ras_sub_4 11 178 - -
Sto7g0163 218 SMART ran_sub_2 19 213 - -
Sto7g0163 218 TIGRFAM small_GTP: small GTP-binding protein domain 12 171 IPR005225 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto7g0163 Sto-Chr7 1244700 1247543 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto7g0163 K07904 - gmx:100810759 405.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto7g0163 7 1244700 1247543 Sto4g2776 4 28667362 28670507 ECH
Sto7g0163 7 1244700 1247543 Sto7g0163 7 1244700 1247543 ECH