Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto7g0161 ATGACCACTTCCAAAGCCATATCTCCCTTCAGGCTCTCTTCCCTCCTCCGCCAGCAGAAGGATCCTGCTCTTGCTTTTGAACTCtttaaaaaccctaatcctaaacctgaTCCCAAGAAGCCTTTCAGGTACTCTTGGCATTCCTACGATCTTATCATCACCAAGCTAGGCCGTGCCAAAATGTTTGATCAAATGGAACAAGTACTCCAGCAACTAAAACAAGAGACACGTTTTATTGTTCGAGAAGAGCTCTTCTGTGAGGTAATATCCTTCTATGGGCGGGCTCGCCTTCCAGCCTGTGCTCTCCAAACATTCCAGTCCATTCCGTCATTCCGGTGTGAACAAACTATAAAATCATTGAATTCACTTTTAAATGCATTTCTGAACTGCAAAGAATATGAGAAAATGAGAGGATTTTTGTCAGGTATTAATGAATATGGAACTCCTGACGCTTGTACATATAATATTCTAATCAATGCTTGTTGTATTGGAGGGGATATAGATCAAGCATGGGATGTGTTTGACGAAATGCTAAGAAATGGGGTTTATCCAACTGTGGTGACTTTTGGGACTTTGGTTCATGGGCTTTGCTTAAGTGGTCAGTTACAAGAAGCTTTAAAGCTAAAAGAGGATATGATGAGGAAATTCAATTTAAAACCTAATGCCTTTTTGTATACAACATTACTTAAAGGCCTTTGTCAGGTTGAGGAGCTAAGTTGGGCCTTCAGGATCAAGGATGAGATGGCAAGCAATAAAGTAAAGTTAGATGCTGCTGCCTATAATACATTGATTGCTGCACTTTTCAAGGTTGGGAGGAAGGAAGAGGCATTGGTTGTTATGGAGGAAATGAAAAAGAGTAATTGCAAACCTGACCTTGTGACTTATAATGTGATGATCAGTGAACATTGTAGGGAGAAAAATTTTGGAGAGGCCTATAAAATTTTGGACCAGATGGAAAATTCTAAGCCTAATGTTGTAAGTTATAATGTGATTATTGATTCACTGTGTAGGGAGGGTAAATGGATTGAAGCAAATGATTTGTTTCAAGATATGCCAAGGCGTAAATGTGCTCCCGATATAGTATCATACCGCACACTTTTTGATGGGCTATGTAGTTGCATGCAATTTAAGGAGGCAGCATTTATTTTAGATGAGATGATATTTAAGGGCTACTCACCACTTTGCGCTAGTATAAACAAGTTTGTTGATAAGTTGTGCAAGGAAGGTAATTTTGAGTTGCTTTCAGAAGTTATTACTAGTTTGGGTAGAGGCAATTTTCTTAATGAGGATATATGGAATATTGTAGTATCCATATTTTGCAGAAAGGAGAAACCATCAGAACCTTTTCAGCTTTTTGATACTTTACTGGTATCATAA 1377 0.3798 MTTSKAISPFRLSSLLRQQKDPALAFELFKNPNPKPDPKKPFRYSWHSYDLIITKLGRAKMFDQMEQVLQQLKQETRFIVREELFCEVISFYGRARLPACALQTFQSIPSFRCEQTIKSLNSLLNAFLNCKEYEKMRGFLSGINEYGTPDACTYNILINACCIGGDIDQAWDVFDEMLRNGVYPTVVTFGTLVHGLCLSGQLQEALKLKEDMMRKFNLKPNAFLYTTLLKGLCQVEELSWAFRIKDEMASNKVKLDAAAYNTLIAALFKVGRKEEALVVMEEMKKSNCKPDLVTYNVMISEHCREKNFGEAYKILDQMENSKPNVVSYNVIIDSLCREGKWIEANDLFQDMPRRKCAPDIVSYRTLFDGLCSCMQFKEAAFILDEMIFKGYSPLCASINKFVDKLCKEGNFELLSEVITSLGRGNFLNEDIWNIVVSIFCRKEKPSEPFQLFDTLLVS 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto7g0161 458 Gene3D Tetratricopeptide repeat domain 321 451 IPR011990 GO:0005515
Sto7g0161 458 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 256 290 IPR002885 -
Sto7g0161 458 Gene3D Tetratricopeptide repeat domain 250 320 IPR011990 GO:0005515
Sto7g0161 458 Gene3D Tetratricopeptide repeat domain 180 249 IPR011990 GO:0005515
Sto7g0161 458 Gene3D Tetratricopeptide repeat domain 6 179 IPR011990 GO:0005515
Sto7g0161 458 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 291 321 IPR002885 -
Sto7g0161 458 TIGRFAM PPR: pentatricopeptide repeat domain 259 291 IPR002885 -
Sto7g0161 458 TIGRFAM PPR: pentatricopeptide repeat domain 187 222 IPR002885 -
Sto7g0161 458 TIGRFAM PPR: pentatricopeptide repeat domain 326 360 IPR002885 -
Sto7g0161 458 TIGRFAM PPR: pentatricopeptide repeat domain 152 186 IPR002885 -
Sto7g0161 458 TIGRFAM PPR: pentatricopeptide repeat domain 224 257 IPR002885 -
Sto7g0161 458 TIGRFAM PPR: pentatricopeptide repeat domain 293 321 IPR002885 -
Sto7g0161 458 TIGRFAM PPR: pentatricopeptide repeat domain 361 393 IPR002885 -
Sto7g0161 458 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 324 358 IPR002885 -
Sto7g0161 458 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 185 220 IPR002885 -
Sto7g0161 458 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 1 455 - -
Sto7g0161 458 SUPERFAMILY HCP-like 125 325 - -
Sto7g0161 458 PANTHER OS05G0207200 PROTEIN 1 455 - -
Sto7g0161 458 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 150 184 IPR002885 -
Sto7g0161 458 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 359 393 IPR002885 -
Sto7g0161 458 Coils Coil 62 82 - -
Sto7g0161 458 Pfam PPR repeat family 256 304 IPR002885 -
Sto7g0161 458 Pfam PPR repeat family 323 372 IPR002885 -
Sto7g0161 458 Pfam PPR repeat family 149 197 IPR002885 -
Sto7g0161 458 Pfam PPR repeat 217 248 IPR002885 -
Sto7g0161 458 Pfam PPR repeat 431 453 IPR002885 -
Sto7g0161 458 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 221 255 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto7g0161 Sto-Chr7 1238196 1239572 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto7g0161 173 451 Glycosyltransferase AT1G05670 27.660 5.18e-31 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto7g0161 - - vvi:109121424 588.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto7g0161 7 1238196 1239572 Sto7g0161 7 1238196 1239572 ECH