Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto7g0123 ATGGCTACATATACCCCAAAGAATATCCTCATCACTGGGGCTGCTGGATTTATTGCATCTCATGTTGCCAACAGGCTCATCCGGAGCTACCCTGATTACAAAATTGTTGTGCTTGATAAACTTGATTACTGCTCTAATTTGAAGAACCTCATTCCTTCAAAATCATCTCCCAACTTCAAGTTCGTGAAGGGGGATATTGGAAGTGCTGACCTTGTCAACTACCTTCTCATCACTGAGTCCATCGACACAATAATGCACTTTGCTGCTCAGACCCATGTTGACAACTCATTTGGTAATAGCTTTGAGTTCACCAAGAACAACATATATGGTACTCATGTCCTGTTAGAAGCCTGCAAGGTCACTGGTCAGATCAGGAGGTTCATTCATGTGAGTACAGATGAGGTCTATGGGGAGACAGATGAGGATGCAGTTGTTGGAAACCATGAAGCTTCTCAACTTCTTCCCACAAATCCTTACTCTGCAACAAAAGCTGGAGCAGAAATGCTTGTCATGGCATATGGTAGGTCATATGGGCTACCTGTGATCACAACACGTGGAAATAATGTTTATGGGCCCAACCAGTTTCCTGAGAAGTTAATTCCAAAGTTCATCCTTTTGGCTATGCAAGGCAAGCCTTTACCAATTCATGGGGATGGTTCCAATGTGAGGAGTTACTTATATTGTGAAGATGTTGCAGAGGCTTTCGAAGTTATCCTTCACAAGGGAGAGGTTGGCCATGTTTACAACATTGGGACTACGAGGGAAAGGAGAGTTATTGATGTAGCCAAAGATATATGCAGACTTTTCTCAATGGACCCAGATACTAGTATAAAATTTGTAGAGAATAGACCATTTAATGACCAAAGATACTTTCTTGATgatcaaaagctgaaggacttGGGTTGGTCTGAGAGGACCATTTGGGAAGAGGGGCTGAAGAAAACCATAGAGTGGTATACTAAGAATCCCGATTGGTGGGGTGATGTCAGTGGCGCGCTGCTTCCTCATCCAAGGATGCTGATGATGCCAGGTGGGATGGAGAAATATTTTGATGAAAACTCTGAAGAAGAAAATCCCGCATCCTTTGTCTCAACTAATACTCGAATGGTGGTTCCATCATCTAAGAACACCGGTGCTCAGCAGAAGCCTCTTTATAAGTTCTTGATCTATGGTAGAACAGGGTGGATTGGAGGTCTGTTAGGGAAACTCTGTGAAAAACAAGGGATTCCCTTTGAATATGGAAAAGGACGCCTAGAGGATCGCACATCACTTCTGGCAGATATTCACAATGTGAAGCCTACCCATGTTTTTAATGCTGCAGGAGTGACTGGAAGACCCAATGTTGACTGGTGTGAATCTCATAAAACAGAAACCATTCGCACTAATGTCGCAGGTACTTTAACATTGGCTGATGTCTGCAGAGAGCAGGGACTCCTGATGATCAATTATGCCACTGGGTGTATATTTGAGTATGATGCAGCACATCCAGAGGGTTCTGGCATTGGTTTTAAGGAGGAAGACAAACCCAACTTTATTGGTTCTTTCTATTCCAAAACCAAAGCTATGGTTGAAGAGCTTTTGAAAGAATATGACAATGTGTGCACTCTCAGGGTTCGCATGCCAATTTCATCTGATCTGAATAACCCACGTAACTTCATTACCAAGATTTCTCGCTATAACAAAGTGGTCAACATTCCAAACAGCATGACTATCTTGGATGAACTTTTGCCTATTTCCATTGAAATGGCTAAGAGAAACTTGCGTGGCATTTGGAACTTCACCAATCCTGGGGCTGTGAGCCACAATGAGATTCTGGAGATGTACAGGGATTACATCAACCCCAACTTCAAGTGGGTTAACTTCACACTTGAAGAGCAAGCCAAGGTGATAATTGCTCCAAGAAGCAACAATGAGATGGATGCGTCCAAATTGAAGAAAGAGTTCCCAGAGTTGCTTCCCATCAAGGAATCACTGATTAAGTATGTCTTTGAACCAAACAGGAAAACCGATAAAAACTAA 2019 0.4225 MATYTPKNILITGAAGFIASHVANRLIRSYPDYKIVVLDKLDYCSNLKNLIPSKSSPNFKFVKGDIGSADLVNYLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMQGKPLPIHGDGSNVRSYLYCEDVAEAFEVILHKGEVGHVYNIGTTRERRVIDVAKDICRLFSMDPDTSIKFVENRPFNDQRYFLDDQKLKDLGWSERTIWEEGLKKTIEWYTKNPDWWGDVSGALLPHPRMLMMPGGMEKYFDENSEEENPASFVSTNTRMVVPSSKNTGAQQKPLYKFLIYGRTGWIGGLLGKLCEKQGIPFEYGKGRLEDRTSLLADIHNVKPTHVFNAAGVTGRPNVDWCESHKTETIRTNVAGTLTLADVCREQGLLMINYATGCIFEYDAAHPEGSGIGFKEEDKPNFIGSFYSKTKAMVEELLKEYDNVCTLRVRMPISSDLNNPRNFITKISRYNKVVNIPNSMTILDELLPISIEMAKRNLRGIWNFTNPGAVSHNEILEMYRDYINPNFKWVNFTLEEQAKVIIAPRSNNEMDASKLKKEFPELLPIKESLIKYVFEPNRKTDKN 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto7g0123 672 Gene3D - 376 672 - -
Sto7g0123 672 CDD dTDP_HR_like_SDR_e 386 658 - -
Sto7g0123 672 CDD dTDP_GD_SDR_e 7 324 IPR005888 GO:0008460|GO:0009225
Sto7g0123 672 Gene3D - 9 313 - -
Sto7g0123 672 PANTHER UDP-GLUCOSE 4,6-DEHYDRATASE 1 668 - -
Sto7g0123 672 Pfam RmlD substrate binding domain 386 556 IPR029903 -
Sto7g0123 672 Gene3D - 200 322 - -
Sto7g0123 672 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 333 IPR036291 -
Sto7g0123 672 Pfam GDP-mannose 4,6 dehydratase 10 315 IPR016040 -
Sto7g0123 672 TIGRFAM dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase 8 328 IPR005888 GO:0008460|GO:0009225
Sto7g0123 672 PANTHER DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED 1 668 - -
Sto7g0123 672 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 385 661 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto7g0123 Sto-Chr7 943571 945673 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto7g0123 8 319 Miscellaneous Gene Families AT4G00110 27.246 1.11e-20 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto7g0123 K12450 - gmx:100789909 1276.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto7g0123 7 943571 945673 Sto7g0123 7 943571 945673 ECH