Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g4364 ATGGCGCCAAAGGCTAAAGCAACCAAGAGTTCAAGTCTCTGCTCTGATCCAAACGGCATTTTCTCTGGAATGGTTGTCTTCTTAGTTGAAAAAGGAGTCCATGCTCGTCGTTTGCAGATTTGGAAGCAGAAATTGGTGCAAAAGGGGGCTGTTATAGAAGAGCGTTTGTCCAAAAGGGTCACTCATGTTTTTACCATCGACTCAGATACCCTTCTCCAGAAATTGGATAGTGAGCTTTTGTCGCGTTTTAAAGGGAGAGTTCTTCTTTATCAGTGGTTAGAAGACAGCTTGAAATCAGGGGAGAAATTATCTGAGGATATGTATATACTAAAGATGGATCCACAAGTTGAAATTACACACGATAAGTCTTTGGATCCTAAACCAGTTGATGGAAGCATTTCTAGCGATGATAAAGGATTGCAGTACAAAAGGATCAAAACCTCTTCTGAGCATACAGGAATAGTAAATCTTGAAAGTGCTCAAGATAGAAGAGAAAATACTCTATGTTCATCACCGAGCACGACAAGCAGTCATGATGACTCAATTGGCGGTTTAAATTATGCAAATACTTGTACAAGACCTCAAACCCCCAATGCTGAAAATGAGGCATCATCCTTGCCATACTGTCCACCTGATCTAAACAAGAATATAACAGAGATATTTGGGAAACTTGTGAACATATATAGAGCCTTGGGTGATGATCGGAGGTCCTTTAGCTATTACAAAGCCATTGCAGTGATTGAGAAGTTGCcatttaaaattgaaagtttggaccAGATCAAAAACCAGCCTGCAATTGGAATATCAATGAAAGATCATATTCAGGAGATAATAACCACTGGCAAGTTTTCTAAGTTGGAACACTTTGAAACTGATGAGAAGGTGCGGACAATATCTTTATTTGGAGAAGTGTGGGGTATAGGTCCAGCCACTGCACTAAAATTGTATGATAAAGGACACCGTACATTAGATGATCTGAGGAATGATGATTCGCTGACAAATGCACAGAAGCTAGGGTTGAAATACTTTTATGATATTAGGCAAAGGATTCCACGCAACGAGGTACAAGAGATGGAGAACATATTGCAGAAAGTTGGAGAGGATATTTTGCCTGGGGTTTTTATCATTTGTGGGGGATCATATAGACGTGGGAGAGCTACCTGTGGGGATATGGACATTATTGTTACGCATCCTGATGGAATAAGGCATAAAGGGTTTCTGCCAAAGTTTGTAAAGCGTTTAAAGGATATGAATTTCCTGAGAGAAGATTTGATTTTCAGTACTCACAGTGAAGAGGGTACTGATTCTAGTGTTGACACCTACTTTGGTTTTTGCACCTTTCCTGGAAGGGAGCTACGGCATCGTATAGATTTGAAGGTGTACCCTAGAGACATATATGCTTTTGGACTTATTGCTTGGACAGGAAATGATGTACTGAATAGGAGGTTGAGATTGCTGGCAGAATCTAAAGGATTCCGACTTGACGATACGGGGTTGTTTCCAATTACTCAGGCTTCAGGTAGTAAACGGGGTGCAAAAGGTAGCGCTAGTTTGAAATTTCACACCGAAAGGGAAGTGTTTGATTTCCTGGGGTTTGCTTGGCTTGAACCACATGAAAGAAATCTTTAA 1629 0.4009 MAPKAKATKSSSLCSDPNGIFSGMVVFLVEKGVHARRLQIWKQKLVQKGAVIEERLSKRVTHVFTIDSDTLLQKLDSELLSRFKGRVLLYQWLEDSLKSGEKLSEDMYILKMDPQVEITHDKSLDPKPVDGSISSDDKGLQYKRIKTSSEHTGIVNLESAQDRRENTLCSSPSTTSSHDDSIGGLNYANTCTRPQTPNAENEASSLPYCPPDLNKNITEIFGKLVNIYRALGDDRRSFSYYKAIAVIEKLPFKIESLDQIKNQPAIGISMKDHIQEIITTGKFSKLEHFETDEKVRTISLFGEVWGIGPATALKLYDKGHRTLDDLRNDDSLTNAQKLGLKYFYDIRQRIPRNEVQEMENILQKVGEDILPGVFIICGGSYRRGRATCGDMDIIVTHPDGIRHKGFLPKFVKRLKDMNFLREDLIFSTHSEEGTDSSVDTYFGFCTFPGRELRHRIDLKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGFRLDDTGLFPITQASGSKRGAKGSASLKFHTEREVFDFLGFAWLEPHERNL 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g4364 542 SMART polxneu3 212 541 IPR002054 GO:0003677|GO:0003887
Sto6g4364 542 Pfam Fingers domain of DNA polymerase lambda 300 346 IPR018944 GO:0003677|GO:0034061
Sto6g4364 542 PRINTS DNA-polymerase family X pol beta-like signature 265 282 IPR002008 GO:0003677|GO:0006281
Sto6g4364 542 PRINTS DNA-polymerase family X pol beta-like signature 337 351 IPR002008 GO:0003677|GO:0006281
Sto6g4364 542 PRINTS DNA-polymerase family X pol beta-like signature 377 396 IPR002008 GO:0003677|GO:0006281
Sto6g4364 542 PRINTS DNA-polymerase family X pol beta-like signature 454 462 IPR002008 GO:0003677|GO:0006281
Sto6g4364 542 PRINTS DNA-polymerase family X pol beta-like signature 469 476 IPR002008 GO:0003677|GO:0006281
Sto6g4364 542 PRINTS DNA-polymerase family X pol beta-like signature 523 540 IPR002008 GO:0003677|GO:0006281
Sto6g4364 542 SUPERFAMILY Nucleotidyltransferase 349 541 IPR043519 -
Sto6g4364 542 Pfam DNA polymerase beta thumb 470 541 IPR029398 -
Sto6g4364 542 Gene3D BRCT domain 13 112 IPR036420 -
Sto6g4364 542 PANTHER DNA POLYMERASE TYPE-X FAMILY MEMBER 20 541 IPR022312 GO:0003677|GO:0003887|GO:0006281
Sto6g4364 542 Pfam Helix-hairpin-helix domain 214 278 IPR010996 -
Sto6g4364 542 SUPERFAMILY BRCT domain 12 113 IPR036420 -
Sto6g4364 542 Gene3D Beta Polymerase, domain 2 349 474 IPR043519 -
Sto6g4364 542 MobiDBLite consensus disorder prediction 163 182 - -
Sto6g4364 542 SUPERFAMILY DNA polymerase beta, N-terminal domain-like 208 288 IPR027421 -
Sto6g4364 542 CDD NT_POLXc 215 540 IPR002054 GO:0003677|GO:0003887
Sto6g4364 542 ProSitePatterns DNA polymerase family X signature. 379 398 IPR019843 GO:0016779
Sto6g4364 542 Pfam DNA polymerase beta palm 349 462 IPR028207 -
Sto6g4364 542 Gene3D DNA polymerase, thumb domain 475 542 IPR037160 -
Sto6g4364 542 SUPERFAMILY PsbU/PolX domain-like 292 347 - -
Sto6g4364 542 ProSiteProfiles BRCT domain profile. 16 110 IPR001357 -
Sto6g4364 542 Gene3D - 288 347 - -
Sto6g4364 542 PRINTS DNA-polymerase family X signature 306 323 IPR022312 GO:0003677|GO:0003887|GO:0006281
Sto6g4364 542 PRINTS DNA-polymerase family X signature 376 390 IPR022312 GO:0003677|GO:0003887|GO:0006281
Sto6g4364 542 PRINTS DNA-polymerase family X signature 390 398 IPR022312 GO:0003677|GO:0003887|GO:0006281
Sto6g4364 542 PRINTS DNA-polymerase family X signature 455 464 IPR022312 GO:0003677|GO:0003887|GO:0006281
Sto6g4364 542 PRINTS DNA-polymerase family X signature 471 484 IPR022312 GO:0003677|GO:0003887|GO:0006281
Sto6g4364 542 PRINTS DNA-polymerase family X signature 522 540 IPR022312 GO:0003677|GO:0003887|GO:0006281
Sto6g4364 542 Gene3D - 187 287 IPR027421 -
Sto6g4364 542 PANTHER DNA POLYMERASE IV 20 541 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g4364 Sto-Chr6 46217489 46223918 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g4364 K03512 - gmx:100820492 805.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g4364 6 46217489 46223918 Sto6g4364 6 46217489 46223918 ECH