Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g4352 ATGTGCTATGCAATTCTAATCCGCTTGCGCCGTTACGCTTCTTCGCCTTCTGCATTTCCCCCTtctctgctccaccaagctctaagcttttccttctcctcctccgcATCGCAAGCGCCACTTAAAGCATCTGCAGCAATGGTGGCTCATCCCAAGGACGATGCCTACCTCAACGCCGTCATACCCAAGCGTATCAAATTCTTCGAGACCATCCAGGCTCAGCAACTCGCTCATCGCCAATCTCTCCCCGCTGATCCCATCAAGATTACTTTACCCGACAAGAACGTCAAGGAAGGGAAGAAGTGGGTGACCTCGCCCTTGGATATTGCCAGAGAGATTTCCAAGAATTTAGCTGCCAACGCTCTGATTGCCAAAGTAAATGGGGTTCTATGGGATATGACAAGGCCTTTGGAAGATGATTGTGAGCTTCAGATTTTCAAATTTGAGGACGACGAAGGACGTGACACTTTCTGGCATTCCAGTGCTCACATTCTGGGGCAGGCTCTTGAGGTGGAGTATGGATGTAAGCTCTGCATTGGCCCCTGCACAACTAGAGGAGAGGGATTCTATTATGATGCATTTTATGGTGACTTGAGTTTGAATGATGATCACTTTAAGCAGATTGAGTCAGGGGCATCAAAGGCTGTTGCGGAAAAACAACCGTTTGAACGCATTGAAGTATCAAGGGATCAGGCACTTGAAATGTTTTCTGATAATAAGTTTAAGGCAAGtataGTTGAAATCATCAAAGATTTGCCTGCTGACAGAACTATCACAGTATACAGATGTGGTCCTTTGGTTGATTTGTGTCGTGGACCACATATACCTAATACATCCTTTGTGAGAGCACTTGCATGTCTTAAGGCTTCATCGGCATATTGGAGAGGAGACAAAGATCGGGAAAGTTTACAGAGAGTTTATGGGATATCTTATCCTGATCAAAAGAGTTTGAAGGAATATATCAACCGGTTGGAGGAGGCTAAAAAGTATGACCACAGATTGTTGGGTGTAAAACAGGAGCTTATTCTTCATCATGAGTGGAGCCCAGGAAGTTGGTTTTTTCTTCCCCACGGGACACGGATTTACAACAAATTAATGGAGTTTATTCGAAATCAGTATAGAGAAAGAGGTTACCAAGAGGTCATATCTCCAAATGTATATAATATGGACCTCTGGGAACAATCTGGGCATGCTGCAAATTACAAAGAGAATATGTTTGTCTTTGAGATTGAAAAGCAAGAGTTTGGGCTGAAACCAATGAATTGCCCAGGGCACTGCTTGATGTTTAAACACAGAGTTCGCTCATATAGAGAACTTCCTCTTCGACTGGCTGATTTTGGGGTCTTACATCGTAATGAGGCTAGTGGTGCCCTGAGTGGACTGACACGTGTTAGGAGATTTCAGCAGGATGATGCCCATATCTTCTGCAGGGAATCCCAGGTAAAGGATGAAGTGAGACGTGCCTTGGATTTCATCAATTATGCCTATACCATATTTGGTTTCACCTATGATCTGAAGCTTTCAACGAGGCCAGAAAAATATCTTGGAGATTTAGCAACATGGGAGAAGGCTGAAAGTGCTCTCAAAGAAGCTTTAGATGAGTTTGGGAAGCCTTGGCAGGTAAATGAAGGTGATGGTGCATTCTATGGACCAAAGATAGATATCAGTGTATCTGATGCATTGAACAGGAAATTCCAGTGTGCAACTTTGCAGCTTGACTTCCAGCTTCCAGATCGTTTTAAGCTGGAGTACTCAGCTGAGGATGAAGCCAAAATTGAAAGGCCTGTTATGATACACAGAGCCATTCTAGGATCTGTTGAGCGCATGTTTGCTATATTATTGGAGCACTACAAGGGTAAATGGCCCTTCTGGCTCAGCCCTCGACAAGCTATTGTTTGCCCTGTGTCAGAGAAATCACAGTCTTATGCAATTGAGGTGCATGAAAGGCACAGTGCATTTATATTCCGTATGGTAGatttaaattttcttatttctgGTCAACTTATTGTCACATTTGTAAAATCAACAGTCTATTATTGTTTATAA 2046 0.4208 MCYAILIRLRRYASSPSAFPPSLLHQALSFSFSSSASQAPLKASAAMVAHPKDDAYLNAVIPKRIKFFETIQAQQLAHRQSLPADPIKITLPDKNVKEGKKWVTSPLDIAREISKNLAANALIAKVNGVLWDMTRPLEDDCELQIFKFEDDEGRDTFWHSSAHILGQALEVEYGCKLCIGPCTTRGEGFYYDAFYGDLSLNDDHFKQIESGASKAVAEKQPFERIEVSRDQALEMFSDNKFKASIVEIIKDLPADRTITVYRCGPLVDLCRGPHIPNTSFVRALACLKASSAYWRGDKDRESLQRVYGISYPDQKSLKEYINRLEEAKKYDHRLLGVKQELILHHEWSPGSWFFLPHGTRIYNKLMEFIRNQYRERGYQEVISPNVYNMDLWEQSGHAANYKENMFVFEIEKQEFGLKPMNCPGHCLMFKHRVRSYRELPLRLADFGVLHRNEASGALSGLTRVRRFQQDDAHIFCRESQVKDEVRRALDFINYAYTIFGFTYDLKLSTRPEKYLGDLATWEKAESALKEALDEFGKPWQVNEGDGAFYGPKIDISVSDALNRKFQCATLQLDFQLPDRFKLEYSAEDEAKIERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQSYAIEVHERHSAFIFRMVDLNFLISGQLIVTFVKSTVYYCL 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g4352 681 CDD ThrRS_core 331 627 IPR033728 -
Sto6g4352 681 Pfam tRNA synthetase class II core domain (G, H, P, S and T) 408 617 IPR002314 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Sto6g4352 681 PRINTS Threonyl-tRNA synthetase signature 417 445 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Sto6g4352 681 PRINTS Threonyl-tRNA synthetase signature 450 473 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Sto6g4352 681 PRINTS Threonyl-tRNA synthetase signature 551 579 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Sto6g4352 681 PRINTS Threonyl-tRNA synthetase signature 595 608 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Sto6g4352 681 PRINTS Threonyl-tRNA synthetase signature 622 634 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Sto6g4352 681 Gene3D - 150 310 - -
Sto6g4352 681 Gene3D - 620 662 IPR036621 -
Sto6g4352 681 CDD TGS_ThrRS 87 152 - -
Sto6g4352 681 SUPERFAMILY Class II aaRS ABD-related 615 649 - -
Sto6g4352 681 TIGRFAM thrS: threonine--tRNA ligase 158 649 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Sto6g4352 681 ProSiteProfiles TGS domain profile. 85 147 IPR004095 -
Sto6g4352 681 Gene3D Bira Bifunctional Protein; Domain 2 311 619 IPR045864 -
Sto6g4352 681 SUPERFAMILY TGS-like 87 147 IPR012676 -
Sto6g4352 681 PANTHER THREONINE--TRNA LIGASE, CYTOPLASMIC 49 655 - -
Sto6g4352 681 SMART tRNA_SAD_4 258 307 IPR012947 GO:0004812|GO:0005524|GO:0043039
Sto6g4352 681 Gene3D - 85 147 IPR012675 -
Sto6g4352 681 Pfam TGS domain 87 147 IPR004095 -
Sto6g4352 681 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 356 622 IPR006195 -
Sto6g4352 681 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 258 307 IPR012947 GO:0004812|GO:0005524|GO:0043039
Sto6g4352 681 SUPERFAMILY Class II aaRS and biotin synthetases 331 614 IPR045864 -
Sto6g4352 681 SUPERFAMILY ThrRS/AlaRS common domain 150 329 IPR018163 GO:0000166
Sto6g4352 681 PANTHER THREONINE-TRNA LIGASE 49 655 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g4352 Sto-Chr6 46124547 46131566 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g4352 K01868 - gmx:100812652 1136.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g4352 6 46124547 46131566 Sto6g4352 6 46124547 46131566 ECH